~ruther/guix-local

ref: bdc7be59ebfdce21184ccacb863414d0cbf6fae6 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 290.1 KiB
bdc7be59 — Marius Bakke 9 years ago 
gnu: Add bcftools.

* gnu/packages/bioinformatics.scm (bcftools): New variable.
e301bfc8 — Marius Bakke 9 years ago 
gnu: python2-pbcore: Update to 1.2.10.

* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
fd49eb21 — Marius Bakke 9 years ago 
gnu: python-pysam: Update to 0.9.1.4.

* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
675d7ae2 — Ricardo Wurmus 9 years ago 
gnu: ncbi-vdb: Only build on i686 and x86_64.

* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
af8de203 — Ben Woodcroft 9 years ago 
gnu: vsearch: Update to 2.1.1.

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
f3cfe451 — Ricardo Wurmus 9 years ago 
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.

* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
  New variable.
684f29bd — Ricardo Wurmus 9 years ago 
gnu: Add r-grohmm.

* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
7f903d73 — Ricardo Wurmus 9 years ago 
gnu: Add r-systempiper.

* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
cb99d457 — Ricardo Wurmus 9 years ago 
gnu: Add r-shortread.

* gnu/packages/bioinformatics.scm (r-shortread): New variable.
89f40c5e — Ricardo Wurmus 9 years ago 
gnu: Add r-gostats.

* gnu/packages/bioinformatics.scm (r-gostats): New variable.
1a1931f7 — Ricardo Wurmus 9 years ago 
gnu: Add r-category.

* gnu/packages/bioinformatics.scm (r-category): New variable.
ad740ff8 — Ricardo Wurmus 9 years ago 
gnu: Add r-gseabase.

* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
cd9e7dc7 — Ricardo Wurmus 9 years ago 
gnu: Add r-rbgl.

* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
e8163773 — Ricardo Wurmus 9 years ago 
gnu: Add r-annotationforge.

* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
ad34f0ac — Ricardo Wurmus 9 years ago 
gnu: Add r-deseq2.

* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2301fd3e — Ricardo Wurmus 9 years ago 
gnu: Add r-genefilter.

* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
07a664cd — Ricardo Wurmus 9 years ago 
gnu: Add r-geneplotter.

* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
8c6de588 — Ricardo Wurmus 9 years ago 
gnu: Add r-annotate.

* gnu/packages/bioinformatics.scm (r-annotate): New variable.
646a8433 — Ricardo Wurmus 9 years ago 
gnu: sra-tools: Update to 2.7.0.

* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
40974c93 — Ricardo Wurmus 9 years ago 
gnu: ncbi-vdb: Update to 2.7.0.

* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
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