~ruther/guix-local

bdc7be59 — Marius Bakke 9 years ago 
gnu: Add bcftools.

* gnu/packages/bioinformatics.scm (bcftools): New variable.
e301bfc8 — Marius Bakke 9 years ago 
gnu: python2-pbcore: Update to 1.2.10.

* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
c2efe1ae — Marius Bakke 9 years ago 
gnu: Add python-pyxb.

* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
fd49eb21 — Marius Bakke 9 years ago 
gnu: python-pysam: Update to 0.9.1.4.

* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
8a54c0ec — Ludovic Courtès 9 years ago 
guix build: Gracefully handle packages without source for '-S'.

Fixes <http://bugs.gnu.org/22836>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* guix/scripts/build.scm (options->derivations): Gracefully
handle (package-source p) = #f.
3c185b24 — Ludovic Courtès 9 years ago 
Add missing exports.

Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.

* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
9ad09652 — Leo Famulari 9 years ago 
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
8be42e5d — Leo Famulari 9 years ago 
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].

* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
58478cc1 — Danny Milosavljevic 9 years ago 
gnu: libftdi: Propagate the libusb input.

* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.

Signed-off-by: Leo Famulari <leo@famulari.name>
675d7ae2 — Ricardo Wurmus 9 years ago 
gnu: ncbi-vdb: Only build on i686 and x86_64.

* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
bc600b80 — Ricardo Wurmus 9 years ago 
gnu: ghc-pandoc: Update to 1.17.2.

* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
5a502d9a — Ricardo Wurmus 9 years ago 
gnu: ghc-texmath: Update to 0.8.6.5.

* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
2e9b1276 — Ricardo Wurmus 9 years ago 
gnu: ghc-cmark: Update to 0.5.3.1.

* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
8f1e2dca — Ricardo Wurmus 9 years ago 
gnu: ghc-highlighting-kate: Update to 0.6.3.

* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
ae87e4fc — Ricardo Wurmus 9 years ago 
gnu: ghc-pandoc-types: Update to 1.16.1.1.

* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
1da48e43 — Ricardo Wurmus 9 years ago 
gnu: ghc-tagsoup: Update to 0.14.

* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
1a545a1e — Ricardo Wurmus 9 years ago 
gnu: tbb: Fail on test errors.

* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
ba4529c4 — Ricardo Wurmus 9 years ago 
gnu: ghc-tls: Update to 1.3.8.

* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
7f5ca399 — Ricardo Wurmus 9 years ago 
gnu: tbb: Use modify-phases syntax.

* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
af8de203 — Ben Woodcroft 9 years ago 
gnu: vsearch: Update to 2.1.1.

* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
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