~ruther/guix-local

ref: 7c2ee273600a6a39f08bbef9d9fd4497f0bcbbb5 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 636.5 KiB
7c2ee273 — Ricardo Wurmus 4 years ago 
gnu: fastp: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fastp)[arguments]: Use a gexp.
64aafe4b — Ricardo Wurmus 4 years ago 
gnu: java-picard: Replace reference to %build-inputs.

* gnu/packages/bioinformatics.scm (java-picard): Use a gexp.
a3b00a21 — Ricardo Wurmus 4 years ago 
gnu: java-htsjdk: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (java-htsjdk)[arguments]: Use a gexp.
62e06418 — Ricardo Wurmus 4 years ago 
gnu: fxtract: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fxtract)[arguments]: Use a gexp.
4f03151c — Ricardo Wurmus 4 years ago 
gnu: delly: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (delly)[arguments]: Replace reference to
%outputs with a gexp.
3601fcbf — Ricardo Wurmus 4 years ago 
gnu: libbigwig: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (libbigwig)[arguments]: Replace reference to
%outputs with a gexp.
fd607a9e — Ricardo Wurmus 4 years ago 
gnu: cd-hit: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Replace reference to
%outputs with gexp.
c40852a2 — Ricardo Wurmus 4 years ago 
gnu: bowtie1: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Remove reference to
%outputs by using a gexp.
a47a90b9 — Ricardo Wurmus 4 years ago 
gnu: bowtie: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace reference to
%outputs with a gexp.
f5c38ee4 — Ricardo Wurmus 4 years ago 
gnu: bless: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bless)[arguments]: Replace reference to
%build-inputs with a gexp.  Use the dynamic library of zlib while we're at it.
[inputs]: Remove zlib:static.
dd19c8da — Ricardo Wurmus 4 years ago 
gnu: bless: Remove trailing #T from snippet and build phases.

* gnu/packages/bioinformatics.scm (bless)[source, arguments]: Remove all
trailing #Ts.
0e090654 — Ricardo Wurmus 4 years ago 
gnu: bedtools: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use a gexp instead of
referencing %outputs.
a5663a7c — Ricardo Wurmus 4 years ago 
gnu: qtltools: Replace references to %build-inputs.

* gnu/packages/bioinformatics.scm (qtltools)[arguments]: Use a gexp instead of
referencing %build-inputs.
6d4f2601 — Ricardo Wurmus 4 years ago 
gnu: bamutils: Update to 1.0.14.

* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.14.
[arguments]: Patch DATE for reproducibility; prepare sources of libstatgen.
[native-inputs]: Add sources of libstatgen.
673cc299 — Ricardo Wurmus 4 years ago 
gnu: bamutils: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bamutils)[arguments]: Use gexp.
361e0d9f — Ricardo Wurmus 4 years ago 
gnu: bamm: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bamm)[arguments]: Use gexp instead of
%build-inputs.
7fb5bfc5 — Ricardo Wurmus 4 years ago 
gnu: python-plastid: Update to 0.5.1.

* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.5.1.
37c475eb — Ricardo Wurmus 4 years ago 
gnu: prinseq: Fix use of SEARCH-INPUT-FILE.

* gnu/packages/bioinformatics.scm (prinseq)[arguments]: Pass missing argument
to SEARCH-INPUT-FILE.
b15e543d — Ludovic Courtès 4 years ago 
Merge branch 'master' into core-updates-frozen
e74bcbc6 — Ricardo Wurmus 4 years ago 
gnu: python-scanpy: Set PYTHONPATH variable.

This is a follow-up to commit 664721422cd17c151df00b9ecab268d1aa18e3b3.

* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Set PYTHONPATH
variable during the build as GUIX_PYTHONPATH does not have the intended
effect.
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