~ruther/guix-local

7c2ee273 — Ricardo Wurmus 4 years ago 
gnu: fastp: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fastp)[arguments]: Use a gexp.
64aafe4b — Ricardo Wurmus 4 years ago 
gnu: java-picard: Replace reference to %build-inputs.

* gnu/packages/bioinformatics.scm (java-picard): Use a gexp.
a3b00a21 — Ricardo Wurmus 4 years ago 
gnu: java-htsjdk: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (java-htsjdk)[arguments]: Use a gexp.
62e06418 — Ricardo Wurmus 4 years ago 
gnu: fxtract: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fxtract)[arguments]: Use a gexp.
4f03151c — Ricardo Wurmus 4 years ago 
gnu: delly: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (delly)[arguments]: Replace reference to
%outputs with a gexp.
3601fcbf — Ricardo Wurmus 4 years ago 
gnu: libbigwig: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (libbigwig)[arguments]: Replace reference to
%outputs with a gexp.
fd607a9e — Ricardo Wurmus 4 years ago 
gnu: cd-hit: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Replace reference to
%outputs with gexp.
c40852a2 — Ricardo Wurmus 4 years ago 
gnu: bowtie1: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Remove reference to
%outputs by using a gexp.
a47a90b9 — Ricardo Wurmus 4 years ago 
gnu: bowtie: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace reference to
%outputs with a gexp.
f5c38ee4 — Ricardo Wurmus 4 years ago 
gnu: bless: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bless)[arguments]: Replace reference to
%build-inputs with a gexp.  Use the dynamic library of zlib while we're at it.
[inputs]: Remove zlib:static.
dd19c8da — Ricardo Wurmus 4 years ago 
gnu: bless: Remove trailing #T from snippet and build phases.

* gnu/packages/bioinformatics.scm (bless)[source, arguments]: Remove all
trailing #Ts.
0e090654 — Ricardo Wurmus 4 years ago 
gnu: bedtools: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use a gexp instead of
referencing %outputs.
a5663a7c — Ricardo Wurmus 4 years ago 
gnu: qtltools: Replace references to %build-inputs.

* gnu/packages/bioinformatics.scm (qtltools)[arguments]: Use a gexp instead of
referencing %build-inputs.
6d4f2601 — Ricardo Wurmus 4 years ago 
gnu: bamutils: Update to 1.0.14.

* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.14.
[arguments]: Patch DATE for reproducibility; prepare sources of libstatgen.
[native-inputs]: Add sources of libstatgen.
673cc299 — Ricardo Wurmus 4 years ago 
gnu: bamutils: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bamutils)[arguments]: Use gexp.
361e0d9f — Ricardo Wurmus 4 years ago 
gnu: bamm: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bamm)[arguments]: Use gexp instead of
%build-inputs.
4f536c46 — Ricardo Wurmus 4 years ago 
gnu: python2-openpyxl: Explicitly build with Python 2.

* gnu/packages/python-xyz.scm (python2-openpyxl)[arguments]: Add value
for #:python field.
7fb5bfc5 — Ricardo Wurmus 4 years ago 
gnu: python-plastid: Update to 0.5.1.

* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.5.1.
e080e35d — Ludovic Courtès 4 years ago 
gnu: glade: Remove dependency on GJS on non-x86_64.

* gnu/packages/gnome.scm (glade3)[arguments]: Add optional
'skip-gjs-test' phase.
[native-inputs]: Provide GJS only when 'target-x86-64?'.
689d141c — Ludovic Courtès 4 years ago 
gnu: Remove librsvg@2.50 from the Xfce dependency graph.

This allows us to build Xfce on non-x86_64 platforms.

* gnu/packages/gstreamer.scm (gst-plugins-good)[inputs]: Use
'librsvg-for-system' instead of 'librsvg'.
* gnu/packages/gtk.scm (guile-rsvg)[inputs]: Likewise.
* gnu/packages/xfce.scm (xfce4-xkb-plugin)[inputs]: Likewise.
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