gnu: plink-ng: Enable tests.

* gnu/packages/bioinformatics.scm (plink-ng)[arguments]: Replace 'check phase
to run tests; do not disable tests via arguments.
[native-inputs]: Add diffutils, plink, and python.

gnu: plink-ng: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (plink-ng)[arguments]: Remove reference to
%outputs by using a gexp.

gnu: plink: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (plink)[arguments]: Use a gexp to replace
reference to %build-inputs.

gnu: plink: Remove trailing #T.

* gnu/packages/bioinformatics.scm (plink)[arguments]: Remove trailing #T from
build phase.

gnu: rsem: Update to 1.3.3.

* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.3.
[arguments]: Build with gnu++11 standard; patch sources for compatibility.

gnu: rsem: Remove trailing #T.

* gnu/packages/bioinformatics.scm (rsem)[arguments]: Remove trailing #T from
build phases.

gnu: rsem: Remove references to %build-inputs.

* gnu/packages/bioinformatics.scm (rsem)[arguments]: Use a gexp.

gnu: rsem: Remove trailing #T from snippet.

* gnu/packages/bioinformatics.scm (rsem)[source]: Remove trailing #T.

gnu: prodigal: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (prodigal)[arguments]: Remove reference to
%outputs by using a gexp.

gnu: prank: Bind INPUTS in 'install phase.

* gnu/packages/bioinformatics.scm (prank)[arguments]: Bind INPUTS in 'install
phase to remove references to %build-inputs.

gnu: prank: Remove trailing #T.

* gnu/packages/bioinformatics.scm (prank)[arguments]: Remove trailing #T from
build phases.

gnu: mash: Replace references to %build-inputs.

* gnu/packages/bioinformatics.scm (mash)[arguments]: Use a gexp.

gnu: mash: Move htslib and capnproto to regular inputs.

* gnu/packages/bioinformatics.scm (mash)[native-inputs]: Move htslib and
capnproto from here...
[inputs]: ...to here.

gnu: mash: Simplify snippet.

* gnu/packages/bioinformatics.scm (mash)[snippet]: Simplify.

gnu: mafft: Remove trailing #T.

* gnu/packages/bioinformatics.scm (mafft)[arguments]: Remove trailing #T from
build phase.

gnu: mafft: Replace references to %build-inputs and %outputs.

* gnu/packages/bioinformatics.scm (mafft)[arguments]: Replace references to
%outputs with a gexp; replace reference to %build-inputs in the 'wrap-programs
phase by binding INPUTS.

gnu: jellyfish: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (jellyfish)[arguments]: Use a gexp.

gnu: fastp: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fastp)[arguments]: Use a gexp.

gnu: java-picard: Replace reference to %build-inputs.

* gnu/packages/bioinformatics.scm (java-picard): Use a gexp.

gnu: java-htsjdk: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (java-htsjdk)[arguments]: Use a gexp.