~ruther/guix-local

630671d2 — Ricardo Wurmus 4 years ago 
gnu: mafft: Replace references to %build-inputs and %outputs.

* gnu/packages/bioinformatics.scm (mafft)[arguments]: Replace references to
%outputs with a gexp; replace reference to %build-inputs in the 'wrap-programs
phase by binding INPUTS.
5cb2920b — Ricardo Wurmus 4 years ago 
gnu: jellyfish: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (jellyfish)[arguments]: Use a gexp.
7c2ee273 — Ricardo Wurmus 4 years ago 
gnu: fastp: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fastp)[arguments]: Use a gexp.
64aafe4b — Ricardo Wurmus 4 years ago 
gnu: java-picard: Replace reference to %build-inputs.

* gnu/packages/bioinformatics.scm (java-picard): Use a gexp.
a3b00a21 — Ricardo Wurmus 4 years ago 
gnu: java-htsjdk: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (java-htsjdk)[arguments]: Use a gexp.
62e06418 — Ricardo Wurmus 4 years ago 
gnu: fxtract: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fxtract)[arguments]: Use a gexp.
4f03151c — Ricardo Wurmus 4 years ago 
gnu: delly: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (delly)[arguments]: Replace reference to
%outputs with a gexp.
3601fcbf — Ricardo Wurmus 4 years ago 
gnu: libbigwig: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (libbigwig)[arguments]: Replace reference to
%outputs with a gexp.
fd607a9e — Ricardo Wurmus 4 years ago 
gnu: cd-hit: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Replace reference to
%outputs with gexp.
c40852a2 — Ricardo Wurmus 4 years ago 
gnu: bowtie1: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Remove reference to
%outputs by using a gexp.
a47a90b9 — Ricardo Wurmus 4 years ago 
gnu: bowtie: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace reference to
%outputs with a gexp.
f5c38ee4 — Ricardo Wurmus 4 years ago 
gnu: bless: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bless)[arguments]: Replace reference to
%build-inputs with a gexp.  Use the dynamic library of zlib while we're at it.
[inputs]: Remove zlib:static.
dd19c8da — Ricardo Wurmus 4 years ago 
gnu: bless: Remove trailing #T from snippet and build phases.

* gnu/packages/bioinformatics.scm (bless)[source, arguments]: Remove all
trailing #Ts.
0e090654 — Ricardo Wurmus 4 years ago 
gnu: bedtools: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use a gexp instead of
referencing %outputs.
a5663a7c — Ricardo Wurmus 4 years ago 
gnu: qtltools: Replace references to %build-inputs.

* gnu/packages/bioinformatics.scm (qtltools)[arguments]: Use a gexp instead of
referencing %build-inputs.
6d4f2601 — Ricardo Wurmus 4 years ago 
gnu: bamutils: Update to 1.0.14.

* gnu/packages/bioinformatics.scm (bamutils): Update to 1.0.14.
[arguments]: Patch DATE for reproducibility; prepare sources of libstatgen.
[native-inputs]: Add sources of libstatgen.
673cc299 — Ricardo Wurmus 4 years ago 
gnu: bamutils: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bamutils)[arguments]: Use gexp.
361e0d9f — Ricardo Wurmus 4 years ago 
gnu: bamm: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bamm)[arguments]: Use gexp instead of
%build-inputs.
4f536c46 — Ricardo Wurmus 4 years ago 
gnu: python2-openpyxl: Explicitly build with Python 2.

* gnu/packages/python-xyz.scm (python2-openpyxl)[arguments]: Add value
for #:python field.
7fb5bfc5 — Ricardo Wurmus 4 years ago 
gnu: python-plastid: Update to 0.5.1.

* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.5.1.
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