gnu: diffoscope: Update to 88.
* gnu/packages/package-management.scm (diffoscope): Update to 88.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: awesome: Update to 4.2.
* gnu/packages/wm.scm (awesome): Update to 4.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
services: gdm: Add environment variables.
While not an optimal solution (see comment), this makes GDM functional.
* gnu/services/xorg.scm (gdm-shepherd-service): Set PATH and XDG_DATA_DIRS
environment variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: gdm: Add configure flags for better defaults.
* gnu/packages/gnome.scm (gdm)[arguments]<#:configure-flags>: Add
--with-initial-vt=7 and --enable-gdm-xsession.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: gdm: Fix config file path.
* gnu/packages/gnome.scm (gdm)[arguments]<#:phases>: Fix the
'pre-configure phase so that GDM finds its config file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
hydra: Build hidden packages.
* build-aux/hydra/gnu-system.scm (all-packages): Pass #:select? to
'fold-packages'.
hydra: Factorize package list creation.
* build-aux/hydra/gnu-system.scm (all-packages): New procedure, with
body taken from...
(hydra-jobs): ... here. Use it.
gnu: Add r-gage.
* gnu/packages/bioinformatics.scm (r-gage): New variable.
gnu: Add r-keggrest.
* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
gnu: antlr3-3.3: Prettify build phases.
* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
gnu: r-servr: Update to 0.8.
* gnu/packages/web.scm (r-servr): Update to 0.8.
gnu: r-tidyselect: Update to 0.2.3.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
gnu: r-msnbase: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
gnu: r-mutationalpatterns: Update to 1.4.0.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
gnu: r-annotationhub: Update to 2.10.0.
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
gnu: r-mzr: Remove bundled copy of boost.
* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
gnu: r-mzr: Update to 2.12.0.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
gnu: r-mzid: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
gnu: r-chipseq: Update to 1.28.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.