~ruther/guix-local

25a5b187 — Ludovic Courtès 8 years ago 
hydra: Build hidden packages.

* build-aux/hydra/gnu-system.scm (all-packages): Pass #:select? to
'fold-packages'.
b5033c5a — Ludovic Courtès 8 years ago 
hydra: Factorize package list creation.

* build-aux/hydra/gnu-system.scm (all-packages): New procedure, with
body taken from...
(hydra-jobs): ... here.  Use it.
ad549242 — Oleg Pykhalov 8 years ago 
gnu: expect: Change home-page to http://expect.sourceforge.net/.

* gnu/packages/tcl.scm (expect): Change home-page to
  http://expect.sourceforge.net/.
e160aa1f — Ricardo Wurmus 8 years ago 
gnu: Add r-gage.

* gnu/packages/bioinformatics.scm (r-gage): New variable.
3121814e — Ricardo Wurmus 8 years ago 
gnu: Add r-keggrest.

* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
a9540107 — Ricardo Wurmus 8 years ago 
gnu: antlr3-3.3: Prettify build phases.

* gnu/packages/java.scm (antlr3-3.3)[arguments]: Prettify build phases
"bin-install" and "generate-grammar".
9ecc4c69 — Ricardo Wurmus 8 years ago 
gnu: r-servr: Update to 0.8.

* gnu/packages/web.scm (r-servr): Update to 0.8.
60ec9da3 — Ricardo Wurmus 8 years ago 
gnu: r-tidyselect: Update to 0.2.3.

* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
baa00ee9 — Ricardo Wurmus 8 years ago 
gnu: r-msnbase: Update to 2.4.0.

* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
39d9098d — Ricardo Wurmus 8 years ago 
gnu: r-mutationalpatterns: Update to 1.4.0.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
14b3c719 — Ricardo Wurmus 8 years ago 
gnu: r-annotationhub: Update to 2.10.0.

* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
15ca1959 — Ricardo Wurmus 8 years ago 
gnu: r-mzr: Remove bundled copy of boost.

* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
34b96754 — Ricardo Wurmus 8 years ago 
gnu: r-mzr: Update to 2.12.0.

* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
b500dbcd — Ricardo Wurmus 8 years ago 
gnu: r-mzid: Update to 1.16.0.

* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
eeaa6967 — Ricardo Wurmus 8 years ago 
gnu: r-chipseq: Update to 1.28.0.

* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
158b6743 — Ricardo Wurmus 8 years ago 
gnu: r-genomicfeatures: Update to 1.30.0.

* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
74248d22 — Ricardo Wurmus 8 years ago 
gnu: Add r-rmysql.

* gnu/packages/databases.scm (r-rmysql): New variable.
4dd469ef — Ricardo Wurmus 8 years ago 
gnu: r-rtracklayer: Update to 1.38.0.

* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
a044c7f4 — Ricardo Wurmus 8 years ago 
gnu: r-biocparallel: Update to 1.12.0.

* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
42e11d33 — Ricardo Wurmus 8 years ago 
gnu: r-biomart: Update to 2.34.0.

* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
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