~ruther/guix-local

62da1b34 — Ricardo Wurmus 4 years ago 
gnu: discrover: Add texlive-fonts-ec to inputs.

* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Add
texlive-fonts-ec.
62e19660 — Ricardo Wurmus 4 years ago 
gnu: discrover: Remove trailing #T.

* gnu/packages/bioinformatics.scm (discrover)[arguments]: Remove trailing #T
from build phases.
1f63c46a — Ricardo Wurmus 4 years ago 
gnu: tbsp: Update to 1.0.0-2.dc30c03.

* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03.
[arguments]: Relax requirement on matplot.  This may turn out to be a mistake.
[inputs]: Replace python-biopython with python-biopython-1.73.
1f7c0696 — Ricardo Wurmus 4 years ago 
gnu: mantis: Update to 0.1-2.b6979a2.

* gnu/packages/bioinformatics.scm (mantis): Update to 0.1-2.b6979a2.
[arguments]: Disable the use of SSE4.2 instructions.
[native-inputs]: Build with GCC 7.
738f22fa — Ricardo Wurmus 4 years ago 
gnu: imp: Disable tests.

* gnu/packages/bioinformatics.scm (imp)[arguments]: Disable unreliable test
suite.
acfbb532 — Ricardo Wurmus 4 years ago 
gnu: snap-aligner: Update to 2.0.0.

* gnu/packages/bioinformatics.scm (snap-aligner): Update to 2.0.0.
42a7b521 — Ricardo Wurmus 4 years ago 
gnu: snap-aligner: Remove trailing #T.

* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Remove trailing #T
from 'install phase.
7c58677a — Ricardo Wurmus 4 years ago 
gnu: snap-aligner: Run tests conditionally.

* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Respect TESTS?
option.
298a8d0b — Ricardo Wurmus 4 years ago 
gnu: khmer: Cythonize source files.

* gnu/packages/bioinformatics.scm (khmer)[source]: Remove generated files.
[arguments]: Add phase 'do-use-cython to patch the setup.py to generate cpp
files from Cython sources; add 'build-extensions phase; replace 'check phase.
9a19e8f6 — Ricardo Wurmus 4 years ago 
gnu: cwltool: Update to 3.1.20211107152837.

* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20211107152837.
[arguments]: Adjust phase 'loosen-version-restrictions; remove trailing #T
from build phases; fix /bin/sh invocations in test files.
ee03b51f — Marius Bakke 4 years ago 
gnu: lollypop: Build with libsoup@2.

* gnu/packages/gnome.scm (lollypop)[inputs]: Change from LIBSOUP to
LIBSOUP-MINIMAL-2.
637735da — Marius Bakke 4 years ago 
gnu: rhythmbox: Adjust inputs.

* gnu/packages/gnome.scm (rhythmbox)[inputs]: Change from PYTHON2-PYGOBJECT to
PYTHON-PYGOBJECT. Add LIBSOUP-MINIMAL-2.
14bc2ce4 — Marius Bakke 4 years ago 
gnu: labelme: Loosen Python requirements.

* gnu/packages/image-processing.scm (labelme)[arguments]: Patch setup.py so it
does not require a specific version of Matplotlib.
5fb1ba88 — Ricardo Wurmus 4 years ago 
gnu: newick-utils: Pass -fcommon to compiler.

* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Set CFLAGS.
ed5e6c75 — Ricardo Wurmus 4 years ago 
gnu: blasr: Update to 5.3.5.

* gnu/packages/bioinformatics.scm (blasr): Update to 5.3.5.
38cf62a2 — Ricardo Wurmus 4 years ago 
gnu: blasr: Remove trailing #T.

* gnu/packages/bioinformatics.scm (blasr)[arguments]: Remove trailing #T from
build phase.
d068de0c — Ricardo Wurmus 4 years ago 
gnu: blasr-libcpp: Update to 5.3.5.

* gnu/packages/bioinformatics.scm (blasr-libcpp): Update to 5.3.5.
[inputs]: Add htslib.
b81daed2 — Ricardo Wurmus 4 years ago 
gnu: htseq: Update to 0.12.3.

* gnu/packages/bioinformatics.scm (htseq): Update to 0.12.3.
6eecbfb9 — Ricardo Wurmus 4 years ago 
gnu: clipper: Update to 2.0.1.

* gnu/packages/bioinformatics.scm (clipper): Update to 2.0.1.
[source]: Add snippet to remove pre-compiled files.
[arguments]: Disable tests, delete 'sanity-check phase, and add
'use-python3-for-cython phase.
fc797a3e — Ricardo Wurmus 4 years ago 
gnu: pbbam: Update to 1.7.0.

* gnu/packages/bioinformatics.scm (pbbam): Update to 1.7.0.
[arguments]: Remove phase 'find-googletest; add phase 'patch-tests.
[propagated-inputs]: Add pbcopper.
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