~ruther/guix-local

42a7b521 — Ricardo Wurmus 4 years ago 
gnu: snap-aligner: Remove trailing #T.

* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Remove trailing #T
from 'install phase.
7c58677a — Ricardo Wurmus 4 years ago 
gnu: snap-aligner: Run tests conditionally.

* gnu/packages/bioinformatics.scm (snap-aligner)[arguments]: Respect TESTS?
option.
298a8d0b — Ricardo Wurmus 4 years ago 
gnu: khmer: Cythonize source files.

* gnu/packages/bioinformatics.scm (khmer)[source]: Remove generated files.
[arguments]: Add phase 'do-use-cython to patch the setup.py to generate cpp
files from Cython sources; add 'build-extensions phase; replace 'check phase.
9a19e8f6 — Ricardo Wurmus 4 years ago 
gnu: cwltool: Update to 3.1.20211107152837.

* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20211107152837.
[arguments]: Adjust phase 'loosen-version-restrictions; remove trailing #T
from build phases; fix /bin/sh invocations in test files.
ee03b51f — Marius Bakke 4 years ago 
gnu: lollypop: Build with libsoup@2.

* gnu/packages/gnome.scm (lollypop)[inputs]: Change from LIBSOUP to
LIBSOUP-MINIMAL-2.
637735da — Marius Bakke 4 years ago 
gnu: rhythmbox: Adjust inputs.

* gnu/packages/gnome.scm (rhythmbox)[inputs]: Change from PYTHON2-PYGOBJECT to
PYTHON-PYGOBJECT. Add LIBSOUP-MINIMAL-2.
14bc2ce4 — Marius Bakke 4 years ago 
gnu: labelme: Loosen Python requirements.

* gnu/packages/image-processing.scm (labelme)[arguments]: Patch setup.py so it
does not require a specific version of Matplotlib.
5fb1ba88 — Ricardo Wurmus 4 years ago 
gnu: newick-utils: Pass -fcommon to compiler.

* gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Set CFLAGS.
ed5e6c75 — Ricardo Wurmus 4 years ago 
gnu: blasr: Update to 5.3.5.

* gnu/packages/bioinformatics.scm (blasr): Update to 5.3.5.
38cf62a2 — Ricardo Wurmus 4 years ago 
gnu: blasr: Remove trailing #T.

* gnu/packages/bioinformatics.scm (blasr)[arguments]: Remove trailing #T from
build phase.
d068de0c — Ricardo Wurmus 4 years ago 
gnu: blasr-libcpp: Update to 5.3.5.

* gnu/packages/bioinformatics.scm (blasr-libcpp): Update to 5.3.5.
[inputs]: Add htslib.
b81daed2 — Ricardo Wurmus 4 years ago 
gnu: htseq: Update to 0.12.3.

* gnu/packages/bioinformatics.scm (htseq): Update to 0.12.3.
6eecbfb9 — Ricardo Wurmus 4 years ago 
gnu: clipper: Update to 2.0.1.

* gnu/packages/bioinformatics.scm (clipper): Update to 2.0.1.
[source]: Add snippet to remove pre-compiled files.
[arguments]: Disable tests, delete 'sanity-check phase, and add
'use-python3-for-cython phase.
fc797a3e — Ricardo Wurmus 4 years ago 
gnu: pbbam: Update to 1.7.0.

* gnu/packages/bioinformatics.scm (pbbam): Update to 1.7.0.
[arguments]: Remove phase 'find-googletest; add phase 'patch-tests.
[propagated-inputs]: Add pbcopper.
b764d10e — Ricardo Wurmus 4 years ago 
gnu: bwa-pssm: Fix build.

* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase
'patch-C-error.
4195a877 — Ricardo Wurmus 4 years ago 
gnu: Add pbcopper.

* gnu/packages/bioinformatics.scm (pbcopper): New variable.
8dcf062f — Ricardo Wurmus 4 years ago 
gnu: python-ndg-httpsclient: Add missing input.

* gnu/packages/python-web.scm (python-ndg-httpsclient)[propagated-inputs]: Add
python-pyasn1.
a98fe1d4 — Ricardo Wurmus 4 years ago 
gnu: fsom: Build with GCC 6.

* gnu/packages/bioinformatics.scm (fsom)[native-inputs]: Add gcc-6.
[arguments]: Remove trailing #T.
cbef1824 — Ricardo Wurmus 4 years ago 
gnu: python-velocyto: Remove generated C files.

* gnu/packages/bioinformatics.scm (python-velocyto)[source]: Remove all
generated .c files.
6e67cda7 — Ricardo Wurmus 4 years ago 
gnu: python-schema-salad: Update to 8.2.20211116214159.

* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.2.20211116214159.
[arguments]: Remove trailing #T.
[propagated-inputs]: Replace python-cachecontrol-0.11 with
python-cachecontrol.
[native-inputs]: Add python-black.
Next