gnu: clipper: Update to 2.0.1.

* gnu/packages/bioinformatics.scm (clipper): Update to 2.0.1.
[source]: Add snippet to remove pre-compiled files.
[arguments]: Disable tests, delete 'sanity-check phase, and add
'use-python3-for-cython phase.

gnu: pbbam: Update to 1.7.0.

* gnu/packages/bioinformatics.scm (pbbam): Update to 1.7.0.
[arguments]: Remove phase 'find-googletest; add phase 'patch-tests.
[propagated-inputs]: Add pbcopper.

gnu: bwa-pssm: Fix build.

* gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase
'patch-C-error.

gnu: Add pbcopper.

* gnu/packages/bioinformatics.scm (pbcopper): New variable.

gnu: python-ndg-httpsclient: Add missing input.

* gnu/packages/python-web.scm (python-ndg-httpsclient)[propagated-inputs]: Add
python-pyasn1.

gnu: fsom: Build with GCC 6.

* gnu/packages/bioinformatics.scm (fsom)[native-inputs]: Add gcc-6.
[arguments]: Remove trailing #T.

gnu: python-velocyto: Remove generated C files.

* gnu/packages/bioinformatics.scm (python-velocyto)[source]: Remove all
generated .c files.

gnu: python-schema-salad: Update to 8.2.20211116214159.

* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.2.20211116214159.
[arguments]: Remove trailing #T.
[propagated-inputs]: Replace python-cachecontrol-0.11 with
python-cachecontrol.
[native-inputs]: Add python-black.

gnu: taxtastic: Update to 0.9.2.

* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.9.2.
[arguments]: Delete 'sanity-check and 'python37-compatibility phases;  adjust
'prepare-directory phase.

gnu: taxtastic: Run tests conditionally.

* gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Respect TESTS?
option.

gnu: python-dendropy: Update to 4.5.1.

* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.5.1.
[arguments]: Skip failing tests.

gnu: python-cooler: Use python-cytoolz-for-cooler.

* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz with python-cytoolz-for-cooler.

gnu: Add python-cytoolz-for-cooler.

* gnu/packages/python-xyz.scm (python-cytoolz-for-cooler): New variable.

gnu: python-sparse: Update to 0.13.0.

* gnu/packages/python-xyz.scm (python-sparse): Update to 0.13.0.

gnu: python-dask: Update to 2021.11.2.

* gnu/packages/python-xyz.scm (python-dask): Update to 2021.11.2.
[source]: Fetch from github.
[arguments]: Remove phase 'disable-broken-tests.

gnu: python-dask: Run tests conditionally.

* gnu/packages/python-xyz.scm (python-dask)[arguments]: Respect TESTS? option.

gnu: python-dask: Add missing input for tests.

* gnu/packages/python-xyz.scm (python-dask)[native-inputs]: Add
python-pytest-rerunfailures.

gnu: phylip: Update to 3.697.

* gnu/packages/bioinformatics.scm (phylip): Update to 3.697.

gnu: phylip: Pass -fcommon to compiler.

* gnu/packages/bioinformatics.scm (phylip)[arguments]: Set CFLAGS.

gnu: phylip: Remove trailing #T.

* gnu/packages/bioinformatics.scm (phylip)[arguments]: Remove trailing #T from
build phases.