gnu: crawl: Honor the #:tests? flag. * gnu/packages/games.scm (crawl)[arguments]<#:phases>: Honor the #:tests? flag in custom check phase.
gnu: crawl: Update to 0.29.0. * gnu/packages/games.scm (crawl): Update to 0.29.0. [source]<origin>: Use GIT-FETCH method. [arguments]<#:make-flags>: Match new directory layout. <#:phases>: Add a phase to set version without calling GIT. * gnu/packages/patches/crawl-upgrade-saves.patch: Match new directory layout.
gnu: Add gwl/next. * gnu/packages/package-management.scm (gwl/next): New variable.
gnu: fsearch: Update to 0.2.2. * gnu/packages/search.scm (fsearch): Update to 0.2.2.
bootloader: Remove expired export. This follows up on commit 8a0e1bb12b3c22a8c9a2be17492058ca63ec7c5d. * gnu/bootloader.scm: Don't export bootloader-configuration-additional-configuration, which no longer exists. Reported by muradm in #guix.
gnu: julia: Update to 1.6.7. * gnu/packages/julia.scm (julia): Update to 1.6.7. [arguments]: Add custom 'activate-gnu-source-for-loader phase. Adjust custom 'adjust-test-suite, 'disable-broken-tests phases for changes in the code. Remove trailing #t from phases. Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
gnu: icecat: Update to 91.13.0-guix0-preview1 [security fixes]. Includes fixes for CVE-2022-38472, CVE-2022-38473, and CVE-2022-38478. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
gnu: Add flair. * gnu/packages/bioinformatics.scm (flair): New variable.
gnu: Add python-ncls. * gnu/packages/python-xyz.scm (python-ncls): New variable.
gnu: python-mappy: Update to 2.24. * gnu/packages/bioinformatics.scm (python-mappy): Update to 2.24.
gnu: Add r-ggvenndiagram. * gnu/packages/cran.scm (r-ggvenndiagram): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
gnu: Add r-rvenn. * gnu/packages/cran.scm (r-rvenn): New variable.
gnu: Add r-organism-dplyr. * gnu/packages/bioconductor.scm (r-organism-dplyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
gnu: Add r-bladderbatch. * gnu/packages/bioconductor.scm (r-bladderbatch): New variable.
gnu: Add r-pcaexplorer. * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
gnu: Add r-parathyroidse. * gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
gnu: lxqt: Fix default icon theme. * gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Replace oxygen-icons with breeze-icons.
gnu: python-shapely: Update to 1.8.4. * gnu/packages/python-xyz.scm (python-shapely): Update to 1.8.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
gnu: python-lzo: Use G-expressions. * gnu/packages/python-compression.scm (python-lzo)[arguments]: Rewrite as G-expressions.
gnu: python-lzo: Update to 1.14. * gnu/packages/python-compression.scm (python-lzo): Update to 1.14. [arguments]: Don't explicitly return #t from phases.