gnu: icecat: Update to 91.13.0-guix0-preview1 [security fixes]. Includes fixes for CVE-2022-38472, CVE-2022-38473, and CVE-2022-38478. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
gnu: Add flair. * gnu/packages/bioinformatics.scm (flair): New variable.
gnu: Add python-ncls. * gnu/packages/python-xyz.scm (python-ncls): New variable.
gnu: python-mappy: Update to 2.24. * gnu/packages/bioinformatics.scm (python-mappy): Update to 2.24.
gnu: Add r-ggvenndiagram. * gnu/packages/cran.scm (r-ggvenndiagram): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
gnu: Add r-rvenn. * gnu/packages/cran.scm (r-rvenn): New variable.
gnu: Add r-organism-dplyr. * gnu/packages/bioconductor.scm (r-organism-dplyr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
gnu: Add r-bladderbatch. * gnu/packages/bioconductor.scm (r-bladderbatch): New variable.
gnu: Add r-pcaexplorer. * gnu/packages/bioconductor.scm (r-pcaexplorer): New variable.
gnu: Add r-parathyroidse. * gnu/packages/bioconductor.scm (r-parathyroidse): New variable.
gnu: lxqt: Fix default icon theme. * gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Replace oxygen-icons with breeze-icons.
gnu: python-shapely: Update to 1.8.4. * gnu/packages/python-xyz.scm (python-shapely): Update to 1.8.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
gnu: python-lzo: Use G-expressions. * gnu/packages/python-compression.scm (python-lzo)[arguments]: Rewrite as G-expressions.
gnu: python-lzo: Update to 1.14. * gnu/packages/python-compression.scm (python-lzo): Update to 1.14. [arguments]: Don't explicitly return #t from phases.
gnu: python-jaraco-functools: Disable flaky test. * gnu/packages/python-xyz.scm (python-jaraco-functools)[arguments]: Skip the "test_function_throttled". Reported by Lumine in #guix.
gnu: linux-libre 5.10: Update to 5.10.137. * gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.137. (linux-libre-5.10-pristine-source): Update hash.
gnu: linux-libre 5.15: Update to 5.15.62. * gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.62. (linux-libre-5.15-pristine-source): Update hash.
gnu: linux-libre: Update to 5.18.19. * gnu/packages/linux.scm (linux-libre-5.18-version): Update to 5.18.19. (linux-libre-5.18-pristine-source): Update hash.
gnu: emacs-autothemer: Update to 0.2.6. * gnu/packages/emacs-xyz.scm (emacs-autothemer): Update to 0.2.6.
gnu: emacs-geiser: Update to 0.25.1. * gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.25.1.