@@ 16456,6 16456,55 @@ module capable of computing base-level alignments for very large sequences.")
(home-page "https://github.com/ekg/wfmash")
(license license:expat)))
+(define-public flair
+ (package
+ (name "flair")
+ (version "1.6.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BrooksLabUCSC/flair")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "106swb2q7l20ki58fca1hg95q5f79bgp9gjb0clr2243ycrzyxf8"))))
+ (build-system python-build-system)
+ (arguments
+ (list
+ #:tests? #false ;there are none
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; TODO: implement as a feature of python-build-system (PEP-621,
+ ;; PEP-631, PEP-660)
+ (replace 'build
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)
+ ;; ZIP does not support timestamps before 1980.
+ (setenv "SOURCE_DATE_EPOCH" "315532800")
+ (invoke "python" "-m" "build" "--wheel" "--no-isolation" ".")))
+ (replace 'install
+ (lambda _
+ (apply invoke "pip" "--no-cache-dir" "--no-input"
+ "install" "--no-deps" "--prefix" #$output
+ (find-files "dist" "\\.whl$")))))))
+ (propagated-inputs
+ (list python-mappy
+ python-ncls
+ python-pybedtools
+ python-pysam
+ python-tqdm))
+ (native-inputs
+ (list python-pypa-build python-setuptools))
+ (home-page "https://flair.readthedocs.io/en/latest/")
+ (synopsis "Full-length alternative isoform analysis of RNA")
+ (description "This package implements FLAIR (Full-Length Alternative
+Isoform analysis of RNA) for the correction, isoform definition, and
+alternative splicing analysis of noisy reads. FLAIR has primarily been used
+for nanopore cDNA, native RNA, and PacBio sequencing reads.")
+ (license license:bsd-3)))
+
(define-public go-github-com-biogo-graph
(package
(name "go-github-com-biogo-graph")