gnu: linux-libre: Make build reproducible.
Fixes <https://issues.guix.gnu.org/24028>.
* gnu/packages/linux.scm (make-linux-libre*): Remove trailing #t.
[phases]{configure}: Set KBUILD_BUILD_USER and KBUILD_BUILD_HOST environment
variables.
gnu: nautilus: Update to 41.0.
* gnu/packages/gnome.scm (nautilus): Upgrade to 41.0.
* gnu/packages/gnome.scm (nautilus) [arguments]: Use meson 0.59.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
gnu: gnome-autoar: Update to 0.4.1.
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.4.1.
* gnu/packages/gnome.scm (gnome-autoar) [build-system]: Switch to meson.
* gnu/packages/gnome.scm (gnome-autoar) [native-inputs]: Add glib:bin for
glib-mkenums.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
gnu: gnome-session: Restore elogind support.
* gnu/packages/patches/gnome-session-support-elogind.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/gnome.scm (gnome-session)[source]: Use it.
[arguments]: Add "-Delogind=true" to #:configure-flags; remove
phases that patch in old-style elogind support.
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
gnu: genimage: Update to 14-1.11bb044.
Update to commit 11bb04455 to integrate fixes related to new genext2fs and
e2fsprogs versions.
* gnu/packages/genimage.scm (genimage): Update to 14-1.11bb044.
[arguments]{fix-failing-tests}: Update it.
* gnu/packages/patches/genimage-mke2fs-test.patch: Update it.
gnu: python-scanpy: Set PYTHONPATH variable.
This is a follow-up to commit 664721422cd17c151df00b9ecab268d1aa18e3b3.
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Set PYTHONPATH
variable during the build as GUIX_PYTHONPATH does not have the intended
effect.
gnu: python-scanpy: Update to 1.8.2.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.2.
[arguments]: Disable test_clustermap test.
gnu: xfce-weather-plugin: Fix build by depending on libsoup2.
* gnu/packages/xfce.scm (xfce-weather-plugin)[inputs]: Replace libsoup with
libsoup-minimal-2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
gnu: python-libvirt: Update to 7.9.0.
* gnu/packages/virtualization.scm (python-libvirt): Update to 7.9.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
gnu: python-seaborn: Update to 0.11.2.
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.11.2.
gnu: emacs-elpy: More aggressively trim nondeterministic tests.
More failing tests keep appearing sparingly, a few at a time. With the
following change, the build succeeded 20 rounds.
* gnu/packages/emacs-xyz.scm (emacs-elpy)
[phases]{disable-broken-tests}: Disable whole tests families affected by
nondeterministic failures rather than individual tests.
gnu: perl-cworld-dekker: Use GUIX_PYTHONPATH.
* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use
GUIX_PYTHONPATH.
gnu: python-scanpy: Use GUIX_PYTHONPATH.
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
gnu: python-numpy: Alias to python-numpy-1.20.
Numpy 1.20 is required by numba and umap-learn. Attempts to rename numpy 1.20
to allow it to coexist with numpy 1.21 in the same environment have not been
successful.
* gnu/packages/python-xyz.scm (python-numpy): Rename to...
(python-numpy-next): ...this variable.
(python2-numpy): Use python-numpy-next package as parent.
(python-numpy-1.20): Inherit from python-numpy-next.
(python-numpy): New variable pointing to python-numpy-1.20.
(python-numba)[propagated-inputs]: Replace python-numpy-1.20 with
python-numpy.
gnu: multiqc: Remove sanity check.
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Delete 'sanity-check phase.
gnu: multiqc: Use GUIX_PYTHONPATH.
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Replace PYTHONPATH
with GUIX_PYTHONPATH.
gnu: libmp4v2: Build with '-std=c++03'.
* gnu/packages/video.scm (libmp4v2)[arguments]: Add #:configure-flags.
gnu: python-qtconsole: Add dependency on python-pyqt.
* gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Add
PYTHON-PYQT.
vm: <virtual-machine> defaults to using 'qemu-minimal'.
'qemu-minimal' is enough for system tests, which is the main (only?) use
of <virtual-machine>.
* gnu/system/vm.scm (<virtual-machine>)[qemu]: Default to QEMU-MINIMAL.
gnu: tcp-wrappers: Allow compilation with glibc 2.33.
* gnu/packages/networking.scm (tcp-wrappers)[source]: Add 'snippet'.