~ruther/guix-local

ref: cfaf37d10b20e2d5f5a2b1671eaed2b88c1a7c67 guix-local/gnu d---------
cfaf37d1 — Ricardo Wurmus 4 years ago 
gnu: prodigal: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (prodigal)[arguments]: Remove reference to
%outputs by using a gexp.
09ae51f7 — Ricardo Wurmus 4 years ago 
gnu: prank: Bind INPUTS in 'install phase.

* gnu/packages/bioinformatics.scm (prank)[arguments]: Bind INPUTS in 'install
phase to remove references to %build-inputs.
e128839a — Ricardo Wurmus 4 years ago 
gnu: prank: Remove trailing #T.

* gnu/packages/bioinformatics.scm (prank)[arguments]: Remove trailing #T from
build phases.
114eb987 — Ricardo Wurmus 4 years ago 
gnu: mash: Replace references to %build-inputs.

* gnu/packages/bioinformatics.scm (mash)[arguments]: Use a gexp.
22d9097b — Ricardo Wurmus 4 years ago 
gnu: mash: Move htslib and capnproto to regular inputs.

* gnu/packages/bioinformatics.scm (mash)[native-inputs]: Move htslib and
capnproto from here...
[inputs]: ...to here.
a6b60846 — Ricardo Wurmus 4 years ago 
gnu: mash: Simplify snippet.

* gnu/packages/bioinformatics.scm (mash)[snippet]: Simplify.
31409a4a — Ricardo Wurmus 4 years ago 
gnu: mafft: Remove trailing #T.

* gnu/packages/bioinformatics.scm (mafft)[arguments]: Remove trailing #T from
build phase.
630671d2 — Ricardo Wurmus 4 years ago 
gnu: mafft: Replace references to %build-inputs and %outputs.

* gnu/packages/bioinformatics.scm (mafft)[arguments]: Replace references to
%outputs with a gexp; replace reference to %build-inputs in the 'wrap-programs
phase by binding INPUTS.
5cb2920b — Ricardo Wurmus 4 years ago 
gnu: jellyfish: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (jellyfish)[arguments]: Use a gexp.
7c2ee273 — Ricardo Wurmus 4 years ago 
gnu: fastp: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fastp)[arguments]: Use a gexp.
64aafe4b — Ricardo Wurmus 4 years ago 
gnu: java-picard: Replace reference to %build-inputs.

* gnu/packages/bioinformatics.scm (java-picard): Use a gexp.
a3b00a21 — Ricardo Wurmus 4 years ago 
gnu: java-htsjdk: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (java-htsjdk)[arguments]: Use a gexp.
62e06418 — Ricardo Wurmus 4 years ago 
gnu: fxtract: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (fxtract)[arguments]: Use a gexp.
4f03151c — Ricardo Wurmus 4 years ago 
gnu: delly: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (delly)[arguments]: Replace reference to
%outputs with a gexp.
3601fcbf — Ricardo Wurmus 4 years ago 
gnu: libbigwig: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (libbigwig)[arguments]: Replace reference to
%outputs with a gexp.
fd607a9e — Ricardo Wurmus 4 years ago 
gnu: cd-hit: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Replace reference to
%outputs with gexp.
c40852a2 — Ricardo Wurmus 4 years ago 
gnu: bowtie1: Replace reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie1)[arguments]: Remove reference to
%outputs by using a gexp.
a47a90b9 — Ricardo Wurmus 4 years ago 
gnu: bowtie: Remove reference to %outputs.

* gnu/packages/bioinformatics.scm (bowtie)[arguments]: Replace reference to
%outputs with a gexp.
f5c38ee4 — Ricardo Wurmus 4 years ago 
gnu: bless: Remove reference to %build-inputs.

* gnu/packages/bioinformatics.scm (bless)[arguments]: Replace reference to
%build-inputs with a gexp.  Use the dynamic library of zlib while we're at it.
[inputs]: Remove zlib:static.
dd19c8da — Ricardo Wurmus 4 years ago 
gnu: bless: Remove trailing #T from snippet and build phases.

* gnu/packages/bioinformatics.scm (bless)[source, arguments]: Remove all
trailing #Ts.
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