~ruther/guix-local

ref: 25d188ce12e4e192e4167d03728a8ff69fe0bb35 guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 127.6 KiB
b49c5a58 — Ricardo Wurmus 10 years ago 
gnu: preseq: Update to 2.0.

* gnu/packages/bioinformatics.scm (preseq): Update to 2.0.
[source]: Add file-name field, remove patches.
[arguments]: Remove unused build phases, add make flags.
[inputs]: Add smithlab-cpp.
* gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file.
* gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove
  file.
* gnu-system.am (dist_patch_DATA): Remove them.
c6a24d6e — Ricardo Wurmus 10 years ago 
gnu: Add smithlab-cpp.

* gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
3d51ec91 — Ricardo Wurmus 10 years ago 
gnu: edirect: Update home page.

* gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing
  slash to home page.
c52a382c — Ricardo Wurmus 10 years ago 
gnu: sra-tools: Update to 2.5.4.

* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
9e5ef614 — Ricardo Wurmus 10 years ago 
gnu: ncbi-vdb: Update to 2.5.4.

* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
614a8977 — Ricardo Wurmus 10 years ago 
gnu: ngs-java: Update to 1.2.2.

* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
d6a1cd7c — Ricardo Wurmus 10 years ago 
gnu: ngs-sdk: Update to 1.2.2.

* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
9641a899 — Ricardo Wurmus 10 years ago 
gnu: bless: Build only for x86_64.

* gnu/packages/bioinformatics.scm (bless): Add supported-systems field.
0536727e — Ricardo Wurmus 10 years ago 
gnu: htseq: Propagate numpy.

* gnu/packages/bioinformatics.scm (htseq)[inputs]: Move python2-numpy
  from here ...
[propagated-inputs]: ... to here.
029d9f77 — Ricardo Wurmus 10 years ago 
gnu: mosaik: Build only on x86_64.

* gnu/packages/bioinformatics.scm (mosaik)[supported-systems]: Add
  field.
4d75e03a — Ricardo Wurmus 10 years ago 
gnu: bless: Correct indentation and home-page.

* gnu/packages/bioinformatics.scm (bless): Fix indentation.
  [home-page]: Replace broken URL.
6c2b26e2 — Ricardo Wurmus 10 years ago 
gnu: Add BLESS.

* gnu/packages/bioinformatics.scm (bless): New variable.

Co-authored-by: Diane Trout <diane@ghic.org>
60af3d82 — Ricardo Wurmus 10 years ago 
gnu: hisat: Disable build on non-x86_64.

* gnu/packages/bioinformatics.scm (hisat)[supported-systems]: Add field.
f3674b1c — Ben Woodcroft 10 years ago 
gnu: Add express-beta-diversity.

* gnu/packages/bioinformatics.scm (express-beta-diversity): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
eed588d9 — 宋文武 10 years ago 
Merge branch 'master' into dbus-update
9a067efd — Ricardo Wurmus 10 years ago 
gnu: pbtranscript-tofu: Update to 2.2.3.

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Update to 2.2.3.
  [source]: Remove bundled Cython sources in a snippet.  Replace
  ".tar.gz" extension in file-name field with "-checkout".
  [arguments]: Replace "enter-directory-and-clean-up" phase with
  "enter-directory" phase, and add "patch-setuppy" phase.
  [inputs]: Add python2-h5py.  Move python2-cython ...
  [native-inputs]: ... to this field.
104c1986 — Ricardo Wurmus 10 years ago 
gnu: subread: Use SSE optimizations on x86_64 only.

* gnu/packages/bioinformatics.scm (subread)[arguments]: Override CC and
  CCFLAGS conditionally dependent on target system.
61d5fd03 — Ricardo Wurmus 10 years ago 
gnu: crossmap: Update to 0.2.1.

* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.1.
d3365d48 — Mark H Weaver 10 years ago 
Merge branch 'master' into dbus-update
fe4c37c2 — Ricardo Wurmus 10 years ago 
gnu: Add MOSAIK.

* gnu/packages/bioinformatics.scm (mosaik): New variable.
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