~ruther/guix-local

614a8977cbac1f7ac27a908764eeb5542f32e52e — Ricardo Wurmus 10 years ago d6a1cd7 
gnu: ngs-java: Update to 1.2.2.

* gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2.
[arguments]: Remove build phase "fix-java-symlink-installation".
patch browse .tar.gz 
1 files changed, 2 insertions(+), 20 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +2 -20
@@ 2389,26 2389,8 @@ simultaneously.")
                          (srfi srfi-26))
                         ,@(package-arguments ngs-sdk))
           ((#:phases phases)
            `(alist-cons-after
              'enter-dir 'fix-java-symlink-installation
              (lambda _
                ;; Only replace the version suffix, not the version number in
                ;; the directory name.  Reported here:
                ;; https://github.com/ncbi/ngs/pull/4
                (substitute* "Makefile.java"
                  (((string-append "\\$\\(subst "
                                   "(\\$\\(VERSION[^\\)]*\\)),"
                                   "(\\$\\([^\\)]+\\)),"
                                   "(\\$\\([^\\)]+\\)|\\$\\@)"
                                   "\\)")
                    _ pattern replacement target)
                   (string-append "$(patsubst "
                                  "%" pattern ","
                                  "%" replacement ","
                                  target ")"))))
              (alist-replace
               'enter-dir (lambda _ (chdir "ngs-java") #t)
               ,phases))))))
            `(modify-phases ,phases
               (replace 'enter-dir (lambda _ (chdir "ngs-java") #t)))))))
    (inputs
     `(("jdk" ,icedtea6 "jdk")
       ("ngs-sdk" ,ngs-sdk)))