@@ 1090,6 1090,51 @@ analysis (from RNA-Seq), transcription factor binding quantification in
ChIP-Seq, and analysis of metagenomic data.")
(license license:artistic2.0)))
+(define-public express-beta-diversity
+ (package
+ (name "express-beta-diversity")
+ (version "1.0.7")
+ (source (origin
+ (method url-fetch)
+ (uri
+ (string-append
+ "https://github.com/dparks1134/ExpressBetaDiversity/archive/v"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1djvdlmqvjf6h0zq7w36y8cl5cli6rgj86x65znl48agnwmzxfxr"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'build 'enter-source (lambda _ (chdir "source") #t))
+ (replace 'check
+ (lambda _ (zero? (system* "../bin/ExpressBetaDiversity"
+ "-u"))))
+ (add-after 'check 'exit-source (lambda _ (chdir "..") #t))
+ (replace 'install
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((bin (string-append (assoc-ref outputs "out")
+ "/bin")))
+ (mkdir-p bin)
+ (copy-file "scripts/convertToEBD.py"
+ (string-append bin "/convertToEBD.py"))
+ (copy-file "bin/ExpressBetaDiversity"
+ (string-append bin "/ExpressBetaDiversity"))
+ #t))))))
+ (inputs
+ `(("python" ,python-2)))
+ (home-page "http://kiwi.cs.dal.ca/Software/ExpressBetaDiversity")
+ (synopsis "Taxon- and phylogenetic-based beta diversity measures")
+ (description
+ "Express Beta Diversity (EBD) calculates ecological beta diversity
+(dissimilarity) measures between biological communities. EBD implements a
+variety of diversity measures including those that make use of phylogenetic
+similarity of community members.")
+ (license license:gpl3+)))
+
(define-public fasttree
(package
(name "fasttree")