gnu: r-msnid: Disable vignettes.

* gnu/packages/bioconductor.scm (r-msnid)[arguments]: Disable vignettes.

Change-Id: I47dc4cf5b6d80699d4f22b2b92382ada7ca3322a

gnu: r-pcaexplorer: Add missing inputs.

* gnu/packages/bioconductor.scm (r-pcaexplorer)[native-inputs]: Add
r-airway and r-org-hs-eg-db.

Change-Id: Id559bea8cd4308058a06158e74d3e13d7f645572

gnu: Add r-airway.

* gnu/packages/bioconductor.scm (r-airway): New variable.

Change-Id: I521c1bf868566f80997c8ba80609fd5709a95694

gnu: r-reportingtools: Add missing inputs.

* gnu/packages/bioconductor.scm (r-reportingtools)[native-inputs]: Add
r-all, r-genefilter, r-hgu95av2-db, r-org-hs-eg-db, r-org-mm-eg-db,
r-org-sc-sgd-db, r-pasilla, and r-shiny.
[properties]: Tell updater to ignore r-gsealm.

Change-Id: I9512bbc7a96c328ee05e15bc898969494dca4be0

gnu: Add r-faahko.

* gnu/packages/bioconductor.scm (r-faahko): New variable.

Change-Id: I70cd662bdd202ac78f5f25235fb7b9b9e7d60b37

gnu: r-xcms: Disable tests.

* gnu/packages/bioconductor.scm (r-xcms)[arguments]: Disable tests.
[properties]: Tell updater to ignore r-faahko.
[native-inputs]: Add r-msdata.

Change-Id: I2ee167828534a4046d15d740f6f25d8eff9d589f

gnu: r-biodb: Disable tests.

* gnu/packages/bioconductor.scm (r-biodb)[arguments]: Disable tests.

Change-Id: I40746a3fbfad0801058b7f34182edc358a863fa2

gnu: r-rcas: Add missing inputs

* gnu/packages/bioconductor.scm (r-rcas)[native-inputs]: Add r-biocmanager.
[arguments]: Add phases 'skip-bad-tests and 'set-HOME.

Change-Id: I952ae31347776dc35cf012aaa8146f38b375957a

gnu: r-affyplm: Add missing inputs and disable tests.

* gnu/packages/bioconductor.scm (r-affyplm)[native-inputs]: Add r-affydata and
r-hgu95av2cdf.
[arguments]: Disable tests.
[properties]: Tell updater to keep extra input.

Change-Id: I05778ba527078d46e955a752a2b1af075508fdf0

gnu: Add r-hgu95av2cdf.

* gnu/packages/bioconductor.scm (r-hgu95av2cdf): New variable.

Change-Id: I12095d54198b563a81c0d3967699016fef0f2de0

gnu: Remove r-bioconcotk.

This package has been removed from Bioconductor and tests depend on a package
that has also been removed.

* gnu/packages/bioconductor.scm (r-bioconcotk): Remove variable.

Change-Id: If444fb7a10aea71a5339b4a488683148c84bb236

gnu: r-bigmelon: Add missing inputs.

* gnu/packages/bioconductor.scm (r-bigmelon)[native-inputs]: Add
r-biocstyle and r-knitr.

Change-Id: Ie24831140e5b38d330435231d8ea976a060b4800

gnu: r-chipexoqual: Add missing input.

* gnu/packages/bioconductor.scm (r-chipexoqual)[native-inputs]: Add
r-chipexoqualexample.

Change-Id: I68e5ac7ce3d0c00cfc1838ef7d6b4e2e5410bb50

gnu: Add r-chipexoqualexample.

* gnu/packages/bioconductor.scm (r-chipexoqualexample): New variable.

Change-Id: I181bb085e441d056d886d4110a46668d92cd39f4

gnu: r-genomicstate: Disable tests.

* gnu/packages/bioconductor.scm (r-genomicstate)[arguments]: Disable tests.

Change-Id: Ia2a43c0b20af344e74306f88c3306c6bd40267b0

gnu: r-gqtlstats: Add missing input and disable tests.

* gnu/packages/bioconductor.scm (r-gqtlstats)[native-inputs]: Add r-runit.
[arguments]: Disable tests.

Change-Id: I1b11251e88826970d16f32a1304a92f9c4923bd5

gnu: r-gostats: Add missing inputs.

* gnu/packages/bioconductor.scm (r-gostats)[native-inputs]: Add r-biocgenerics
and r-hgu95av2-db.

Change-Id: I4e5ee933154dc102efe4c034f993c959b2924671

gnu: r-msnbase: Add missing inputs.

* gnu/packages/bioconductor.scm (r-msnbase)[native-inputs]: Add r-msdata,
r-rpx, r-summarizedexperiment, and r-xml.
[arguments]: Add phases 'set-HOME and 'delete-bad-tests.
[properties]: Tell updater to avoid a dependency cycle.

Change-Id: I49f6ec0c516f610785c3e79e0d4a4ad74a9ac38c

gnu: Add r-prolocdata.

* gnu/packages/bioconductor.scm (r-prolocdata): New variable.

Change-Id: Iac4da738f793e2a746d1ef8a17251a3b27c2e599

gnu: Add r-rpx.

* gnu/packages/bioconductor.scm (r-rpx): New variable.

Change-Id: Id8b70a61d2657dfe5588f1cb67074d6fe5f1988c