~ruther/guix-local: gnu: r-affyplm: Add missing inputs and disable tests.

eb04b8ca591db81586b779a20932f7e45fdd44c0 — Ricardo Wurmus 1 year, 11 months ago 0e1b5c7

gnu: r-affyplm: Add missing inputs and disable tests.

* gnu/packages/bioconductor.scm (r-affyplm)[native-inputs]: Add r-affydata and
r-hgu95av2cdf.
[arguments]: Disable tests.
[properties]: Tell updater to keep extra input.

Change-Id: I05778ba527078d46e955a752a2b1af075508fdf0

patch browse .tar.gz .zip

1 files changed, 6 insertions(+), 1 deletions(-)

M gnu/packages/bioconductor.scm

M gnu/packages/bioconductor.scm => gnu/packages/bioconductor.scm +6 -1

@@ 3822,8 3822,12 @@ limma packages.")
        (uri (bioconductor-uri "affyPLM" version))
        (sha256
         (base32 "182zym9g8rzyrmj78yzpdh44av616x6228xzxwa45wz2spg9bj47"))))
-    (properties `((upstream-name . "affyPLM")))
+    (properties
+     `((upstream-name . "affyPLM")
+       (updater-extra-native-inputs . ("r-hgu95av2cdf"))))
     (build-system r-build-system)
+    ;; Tests fail with: return code from pthread_create() is 22
+    (arguments (list #:tests? #false))
     (inputs (list zlib))
     (propagated-inputs
      (list r-affy


@@ 3832,6 3836,7 @@ limma packages.")
            r-gcrma
            r-preprocesscore
            r-zlibbioc))
+    (native-inputs (list r-affydata r-hgu95av2cdf))
     (home-page "https://github.com/bmbolstad/affyPLM")
     (synopsis "Methods for fitting probe-level models")
     (description