~ruther/guix-local

ee883010538bad4846c7f68312e1a220d6219970 — Ricardo Wurmus 1 year, 11 months ago 4b0c460
gnu: Remove r-bioconcotk.

This package has been removed from Bioconductor and tests depend on a package
that has also been removed.

* gnu/packages/bioconductor.scm (r-bioconcotk): Remove variable.

Change-Id: If444fb7a10aea71a5339b4a488683148c84bb236
1 files changed, 0 insertions(+), 46 deletions(-)

M gnu/packages/bioconductor.scm
M gnu/packages/bioconductor.scm => gnu/packages/bioconductor.scm +0 -46
@@ 23018,52 23018,6 @@ classes for individual assays, and allowing subsetting by genomic ranges or
rownames.")
    (license license:artistic2.0)))

(define-public r-bioconcotk
  (package
    (name "r-bioconcotk")
    (version "1.24.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "BiocOncoTK" version))
       (sha256
        (base32
         "0h4cr7lrmbyx7kdj81s7ff75svr01rvzn54svqi93vjilawmpbm3"))))
    (properties `((upstream-name . "BiocOncoTK")))
    (build-system r-build-system)
    (propagated-inputs
     (list r-bigrquery
           r-car
           r-complexheatmap
           r-curatedtcgadata
           r-dbi
           r-dplyr
           r-dt
           r-genomicfeatures
           r-genomicranges
           r-ggplot2
           r-ggpubr
           r-graph
           r-httr
           r-iranges
           r-magrittr
           r-mass
           r-plyr
           r-rgraphviz
           r-rjson
           r-s4vectors
           r-scales
           r-shiny
           r-summarizedexperiment))
    (native-inputs
     (list r-knitr))
    (home-page "https://bioconductor.org/packages/BiocOncoTK")
    (synopsis "Bioconductor components for general cancer genomics")
    (description
     "The purpose of this package is to provide a central interface to various
tools for genome-scale analysis of cancer studies.")
    (license license:artistic2.0)))

(define-public r-biocor
  (package
    (name "r-biocor")