gnu: vcmi: Update to 1.4.2.
* gnu/packages/games.scm (vcmi): Update to 1.4.2.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
gnu: emacs-minimal: Update to 29.2.
* gnu/packages/emacs.scm (emacs-minimal): Update to 29.2.
gnu: emacs-minimal: Set upstream-name to “emacs”.
* gnu/packages/emacs.scm (emacs-minimal)[properties]: Add ‘upstream-name’.
gnu: Add r-netgsa.
* gnu/packages/bioconductor.scm (r-netgsa): New variable.
Change-Id: I79b842854db80bbacdb8ff4c9fccfabdfc04d779
gnu: Add r-glassofast.
* gnu/packages/cran.scm (r-glassofast): New variable.
Change-Id: I6ec7a1f8d4391d7d93f23789f448476b866e4687
gnu: Add r-rcy3.
* gnu/packages/bioconductor.scm (r-rcy3): New variable.
Change-Id: Ia295e8a174f65c8378ae83bdc1dde2877a48ff45
gnu: torbrowser: Add support for language localisation.
* gnu/packages/gnuzilla.scm (all-mozilla-locales): Export it.
* gnu/packages/tor.scm (%torbrowser-locales, translation-base-browser,
translation-tor-browser): New variables.
(torbrowser)[arguments]: In ‘setenv’ phase, set MOZ_CHROME_MULTILOCALE. Add
‘copy-firefox-locales’, ‘copy-basebrowser-locales’, ‘copy-torbrowser-locales’
and ‘build-locales’ phases.
Change-Id: Ia5b28fa5d885f24140893dc270e57e83b0250c67
gnu: r-cytolib: Update to 2.14.1.
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.14.1.
[source]: Do not unbundle included boost.
[arguments]: Remove.
[inputs]: Remove boost.
Change-Id: Ibe26b9df3f73e67fb9f53676a2c27a5aed714895
gnu: python-pandera: Fix build.
* gnu/packages/python-science.scm (python-pandera): Fix build.
[source]: Delete tests/modin directory.
[native-inputs]: Remove python-modin.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: python-pandas-stubs: Update to 1.5.3.230321.
* gnu/packages/python-science.scm (python-pandas-stubs): Update to
1.5.3.230321.
[arguments]<#:test-flags>: Ignore tests that require a version of
python-pyarrow with ORC integration.
[native-inputs]: Add python-odfpy.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: xorg-server-xwayland: Update to 23.2.4 [security fixes].
Fixes CVE-2023-6816, CVE-2024-0229, CVE-2024-21885, CVE-2024-21886,
CVE-2024-0409, and CVE-2024-0408. See the X.Org security advisory
<https://lists.x.org/archives/xorg/2024-January/061525.html> for more
information.
* gnu/packages/xorg.scm (xorg-server-xwayland): Update to 23.2.4.
Change-Id: Ie6343d34652ba0caf00940775b5b227dd9bc05bc
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
gnu: gnutls: Update to 3.8.3 [security-fixes].
Fixes CVE-2024-0553 and CVE-2024-0567.
gnu/packages/tls.scm (gnutls-3.8.2): Rename to ...
(gnutls/fixed): ... this. Update to 3.8.3.
(gnutls): Rename replacement to gnutls/fixed.
Change-Id: Ic44b3b0481ffd51cdc42a2d71a598f001b43c6f7
Signed-off-by: John Kehayias <john.kehayias@protonmail.com>
Co-authored-by: John Kehayias <john.kehayias@protonmail.com>
gnu: Add python-manimpango.
* gnu/packages/python-xyz.scm (python-manimpango): New variable.
Co-authored-by: Troy Figiel <troy@troyfigiel.com>
Change-Id: I80effb2412e7c35ddf69c0d3ff6e2f052f282840
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
gnu: r-org-hs-eg-db: Update to 3.18.0.
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): Update to 3.18.0.
Change-Id: Iaba83a413858a95e81b6488a2f8cde648f0bdeed
gnu: Add r-methylclockdata.
* gnu/packages/bioconductor.scm (r-methylclockdata): New variable.
Change-Id: Id76373a9aec8276dcfd1ec3428d2ce9c81cc51d2
gnu: Add r-experimenthubdata.
* gnu/packages/bioconductor.scm (r-experimenthubdata): New variable.
Change-Id: I5faf26f483898b162bc1f863a4aceb6f46c52c18
gnu: Add r-jaspar2016.
* gnu/packages/bioconductor.scm (r-jaspar2016): New variable.
Change-Id: Ib2970791207b426c39bd0226e01107a35fec0bb2
gnu: Add r-genomicstate.
* gnu/packages/bioconductor.scm (r-genomicstate): New variable.
Change-Id: I1b86c8e849af7b69b5fa9ea2a0e43b4e3e1850b2
gnu: Add r-shinymeta.
* gnu/packages/cran.scm (r-shinymeta): New variable.
Change-Id: I35e1c032283cdc010e4551c0d33f9d4202d9deee