gnu: Add r-shinymeta.

* gnu/packages/cran.scm (r-shinymeta): New variable.

Change-Id: I35e1c032283cdc010e4551c0d33f9d4202d9deee

gnu: Add r-ensdb-hsapiens-v79.

* gnu/packages/bioconductor.scm (r-ensdb-hsapiens-v79): New variable.

Change-Id: I773615df66194ddb195f013f7000d175ac07d095

gnu: Add rust-rustc-demangle-capi-0.1.

* gnu/packages/crates-io.scm (rust-rustc-demangle-capi-0.1): New variable.

Change-Id: I98afb19ed4bdbcb9107a1ab30af49b055802b8b0

Reviewed-by: Efraim Flashner <efraim@flashner.co.il>
Change-Id: Ifeaefa5a377600320c3fd2a637aefaf29707e3b7

gnu: guile-hall: Update to 0.4.1-1.7558ba9.

* gnu/packages/guile-xyz.scm (guile-hall): Update to 0.4.1-1.7558ba9.
[arguments] <modules>: Remove (ice-9 match) and (ice-9 ftw) modules.
Add (guix build guile-build-system).
<phases>: Use gexps.  Streamline hall-wrap-binaries phase.
[native-inputs]: Add guile-3.0 and gettext-minimal.
[propagated-inputs]: Delete field, moving guile-config to...
[inputs]: ... here.  Add bash-minimal and guile-lib.

Change-Id: Idef796dc3ba9ca3fa4df8114efe91af7c5cf7be0

gnu: reuse: Update to 3.0.1.

* gnu/packages/license.scm (reuse): Update to 3.0.1.
[arguments]: New field.

Change-Id: Ibbc5ae8cfa0e0e62b6c64bd90387022e88f9c933

gnu: symengine: Update to 0.11.2.

* gnu/packages/algebra.scm (symengine): Update to 0.11.2.

Change-Id: I34c24dd8591e306a7740f0a3d51077aceec67fab

gnu: python-metpy: Update to 1.6.1.

* gnu/packages/geo.scm (python-metpy): Update to 1.6.1.

Change-Id: Id8d8d6db3e31307242e56c494b6dee7c2ffab8f1

gnu: python-deepxde: Update to 1.10.1.

* gnu/packages/machine-learning.scm (python-deepxde): Update to 1.10.1.

Change-Id: If3515735d4adee8a2f1e9460d6ccb72c6ce26321

gnu: python-mapie: Update to 0.8.2.

* gnu/packages/statistics.scm (python-mapie): Update to 0.8.2.

Change-Id: I82098caa8ed5d3bf68eec9f374f600d203d6b178

gnu: libngspice: Update to 42.

* gnu/packages/engineering.scm (libngspice, ngspice): Update to 42.

Change-Id: Ib7b72724f8f46ce376bd6517cb2652c870edcb0d

gnu: darktable: Update to 4.6.0.

* gnu/packages/photo.scm (darktable): Update to 4.6.0.

Change-Id: Ic64b02e8d191ba91fde1b95b9bcb4321a471dcba

gnu: darktable: Enable more optional features.

* gnu/packages/photo.scm (darktable)[inputs]: Add libjxl, portmidi.

Change-Id: I7747dfc2e88379a13182590f87514951bdd70e0c

gnu: darktable: Build with GCC.

* gnu/packages/photo.scm (darktable)[arguments][#:phases]: Delete the
'prepare-build-environment phase.
[native-inputs]: Remove clang. Add gcc-13.

Change-Id: Ia0dc1c6a717ccd00cd31d378aa51ce63fbf1806a

gnu: gmic: Update to 3.3.3.

gmic was integrated into Krita 5+.

* gnu/packages/image-processing.scm (gmic, gmic-qt): Update to 3.3.3.
(gmic-qt-krita): Delete variable.

Change-Id: I44e33b570bcf3e1df3eba5eb9ede1f333f8a177a

gnu: labplot: Update to 2.10.1.

* gnu/packages/kde.scm (labplot): Update to 2.10.1.
[source]<origin>: Update URI.

Change-Id: I03d24410304fb14daa20f7a75f6947caed63ab84

gnu: python-symengine: Update to 0.11.0.

* gnu/packages/python-xyz.scm (python-symengine): Update to 0.11.0.
[native-inputs]: Replace python-cython with python-cython-3.

Change-Id: Ieab464491e3df6e2bdb5b552cbf48ebf67ff81e4

gnu: Add r-trnadbimport.

* gnu/packages/bioconductor.scm (r-trnadbimport): New variable.

Change-Id: I5a232b50c08ef999f691566ccf5c0fbaf0eb21ea

gnu: Add r-trna.

* gnu/packages/bioconductor.scm (r-trna): New variable.

Change-Id: Ifce902910fa75ddc471d8a25cc974307c19fd1d0

gnu: Add r-modstrings.

* gnu/packages/bioconductor.scm (r-modstrings): New variable.

Change-Id: Ia61816213a7d128ab50a9ae2b2c8879e6ac00499

gnu: Add r-structstrings.

* gnu/packages/bioconductor.scm (r-structstrings): New variable.

Change-Id: I9759520a03ee8178432591c48bf56fb25a379f27