~ruther/guix-local

c8105e81 — Andy Wingo 9 years ago 
gnu: Add libnet6.

* gnu/packages/gobby.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new file.
b61d9627 — Andy Wingo 9 years ago 
gnu: Add libxml++-2.

* gnu/packages/gnome.scm (libxml++-2): New variable.
66329c23 — Andy Wingo 9 years ago 
gnu: New default Dovecot service postmaster_address

* gnu/services/mail.scm (dovecot-configuration): Change default for
  postmaster-address, as dovecot is now requiring a non-empty value and
  will fail to start up otherwise.
* doc/guix.texi (Mail Services): Update.
a777535c — Efraim Flashner 9 years ago 
gnu: aria2: Update to 1.27.1.

* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
99caa6f7 — Ben Woodcroft 9 years ago 
gnu: python-plastid: Update to 1.4.6.

* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
67f66812 — Ben Woodcroft 9 years ago 
gnu: Add python-termcolor.

* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
f536dce5 — Marius Bakke 9 years ago 
gnu: python-pysam: Enable tests.

* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
dff26b23 — Marius Bakke 9 years ago 
gnu: python-pysam: Delete bundled htslib.

* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
397d463a — Marius Bakke 9 years ago 
gnu: python-pysam: Use 'modify-phases'.

* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
bdc7be59 — Marius Bakke 9 years ago 
gnu: Add bcftools.

* gnu/packages/bioinformatics.scm (bcftools): New variable.
e301bfc8 — Marius Bakke 9 years ago 
gnu: python2-pbcore: Update to 1.2.10.

* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
c2efe1ae — Marius Bakke 9 years ago 
gnu: Add python-pyxb.

* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
fd49eb21 — Marius Bakke 9 years ago 
gnu: python-pysam: Update to 0.9.1.4.

* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
8a54c0ec — Ludovic Courtès 9 years ago 
guix build: Gracefully handle packages without source for '-S'.

Fixes <http://bugs.gnu.org/22836>.
Reported by Ricardo Wurmus <rekado@elephly.net>.

* guix/scripts/build.scm (options->derivations): Gracefully
handle (package-source p) = #f.
3c185b24 — Ludovic Courtès 9 years ago 
Add missing exports.

Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.

* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
9ad09652 — Leo Famulari 9 years ago 
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
8be42e5d — Leo Famulari 9 years ago 
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].

* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
58478cc1 — Danny Milosavljevic 9 years ago 
gnu: libftdi: Propagate the libusb input.

* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.

Signed-off-by: Leo Famulari <leo@famulari.name>
675d7ae2 — Ricardo Wurmus 9 years ago 
gnu: ncbi-vdb: Only build on i686 and x86_64.

* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
bc600b80 — Ricardo Wurmus 9 years ago 
gnu: ghc-pandoc: Update to 1.17.2.

* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
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