gnu: Remove r-snapcgh.

This package has been removed with the release of Bioconductor 3.19, and it
now fails to build.

* gnu/packages/bioconductor.scm (r-snapcgh): Remove variable.

Change-Id: Id4408ea2d17d07913fea359292eb3e5d7329b13d

gnu: pigx-scrnaseq: Use Snakemake 5.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-7
with snakemake-5.
[arguments]: Set HOME.

Change-Id: I45257e138c4cf468d179ff35b0c705bc73046052

gnu: pigx-bsseq: Set HOME.

* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Add phase 'pre-check.

Change-Id: Ic88976554e6e7c7955ae9ab4f0232330060446c9

gnu: pigx-chipseq: Set HOME.

* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Add phase 'pre-check.

Change-Id: Ia95db9209b5ea0cb340f9827197bdcc851266961

gnu: pigx-rnaseq: Set HOME.

* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase 'pre-check.

Change-Id: Ibabfa8f14b8eaec6d25ae72a2cd0f33e6a7d2819

gnu: r-tradeseq: Add missing input.

* gnu/packages/bioconductor.scm (r-tradeseq)[native-inputs]: Add
r-delayedmatrixstats.
[properties]: Record it in updater-extra-native-inputs.

Change-Id: Icc877a48320083d2e5c4987643d52d60c9b11f05

gnu: r-screpertoire: Disable one more test.

* gnu/packages/bioconductor.scm (r-screpertoire)[arguments]: Disable one more test.

Change-Id: I9d44fc50137f6e90f69a2e871a375aff192045ae

gnu: r-duckdb: Disable tests.

* gnu/packages/cran.scm (r-duckdb)[arguments]: Disable tests.

Change-Id: I046fe9e9fb34f35c9f2fcaa6bbb726fb4bbfd81c

gnu: r-scdd: Add missing input.

* gnu/packages/bioconductor.scm (r-scdd)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-testthat.

Change-Id: Ibd0925b94ae82145055a0b2c5d53f38df202b077

gnu: pigx-sars-cov-2: Use Snakemake 7.

* gnu/packages/bioinformatics.scm (pigx-sars-cov-2)[inputs]: Replace snakemake
with snakemake-7.

Change-Id: I059ea25c0e4a45e42f8f288cd92f548b9684e624

gnu: pigx-scrnaseq: Use Snakemake 7.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake
with snakemake-7.

Change-Id: I9b903dba192e862d3b5b6ca4e0018ed88069937d

gnu: pigx-bsseq: Use Snakemake 7.

* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake
with snakemake-7.

Change-Id: If82236f94d46c8e1f7f325e6eaf76f68397218d1

gnu: pigx-chipseq: Use Snakemake 7.

* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake
with snakemake-7.

Change-Id: Ib4d7d95713be3535b44ad10b655cf1a217048121

gnu: pigx-rnaseq: Use Snakemake 7.

* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace snakemake
with snakemake-7.

Change-Id: I2ab8af1438b59c3d36951b5901aeb57039b4aafc

gnu: r-automap: Update to 1.1-16.

* gnu/packages/cran.scm (r-automap): Update to 1.1-16.

Change-Id: Id03925a9a292d8761facc8174e4a7baa854209d0

gnu: r-spacefillr: Update to 0.4.0.

* gnu/packages/cran.scm (r-spacefillr): Update to 0.4.0.

Change-Id: I313d740322b991ce5aacaa5d7177d49f2b25bc25

gnu: r-mathjaxr: Update to 1.8-0.

* gnu/packages/cran.scm (r-mathjaxr): Update to 1.8-0.

Change-Id: I1c4286b47602493facbbe72a914319df15b05e86

gnu: r-vgam: Update to 1.1-13.

* gnu/packages/cran.scm (r-vgam): Update to 1.1-13.

Change-Id: Ief01a8634a55b6387e767166a0e146d2d151dbf8

gnu: r-zoltr: Update to 1.0.2.

* gnu/packages/cran.scm (r-zoltr): Update to 1.0.2.
[native-inputs]: Add r-devtools.

Change-Id: If358691f354a2d32a79002a7833e57483f63a916

gnu: r-zonebuilder: Update to 0.1.0.

* gnu/packages/cran.scm (r-zonebuilder): Update to 0.1.0.

Change-Id: If5875def520050b5adfa6fe1c6443979a9646b24