~ruther/guix-local: gnu: pigx-scrnaseq: Use Snakemake 5.

901020cdebaa6923e5c3322e41543acc85da8ca4 — Ricardo Wurmus 1 year, 1 month ago d6f9f9b

gnu: pigx-scrnaseq: Use Snakemake 5.

* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-7
with snakemake-5.
[arguments]: Set HOME.

Change-Id: I45257e138c4cf468d179ff35b0c705bc73046052

patch browse .tar.gz

1 files changed, 3 insertions(+), 1 deletions(-)

M gnu/packages/bioinformatics.scm

M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +3 -1

@@ 18310,6 18310,8 @@ methylation and segmentation.")
       '(modify-phases %standard-phases
          (add-before 'configure 'set-additional-environment-variables
            (lambda _
+             ;; Needed for tests
+             (setenv "HOME" "/tmp")
              ;; Needed because of loompy
              (setenv "NUMBA_CACHE_DIR" "/tmp")
              ;; Needed to capture environment


@@ 18329,7 18331,7 @@ methylation and segmentation.")
            python-loompy
            pandoc
            samtools
-           snakemake-7
+           snakemake-5
            star-for-pigx
            r-minimal
            r-argparser