gnu: Add bio-locus.
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
gnu: Add bio-locus.
* gnu/packages/bioinformatics.scm (bio-locus): New variable.
gnu: system: Add Linux container module.
* gnu/system/linux-container.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/system.scm: Export 'operating-system-etc-directory',
'operating-system-boot-script', 'operating-system-locale-directory', and
'file-union'.
(operating-system-boot-script): Add #:container? keyword argument.
(operating-system-activation-script): Add #:container? keyword argument.
Don't call 'activate-firmware' or 'activate-ptrace-attach' when activating a
container.
build: ruby: Add support for tarball and directory sources.
Previously, the Ruby build system only knew how to work with gem archives,
which made it difficult to build unreleased gems from a Git repository or
released gems in tarball form.
* gnu/build/ruby-build-system.scm (gnu:unpack, gem-archive?): New procedures.
(unpack): Use GNU build system unpack phase for non-gem sources.
(build): Rebuild the gemspec iff the source is a gem archive.
* guix.texi ("ruby-build-system"): Mention that tarballs and directories are
acceptable.
gnu: Add python-oslo.utils.
* gnu/packages/openstack.scm (python-oslo.utils, python2-oslo.utils): New variables.
gnu: Add python-debtcollector.
* gnu/packages/openstack.scm (python-debtcollector,
python2-debtcollector): New variables.
gnu: Add python-monotonic.
* gnu/packages/python.scm (python-monotonic, python2-monotonic): New variables.
gnu: Add python-iso8601.
* gnu/packages/python.scm (python-iso8601, python2-iso8601): New variables.
gnu: Add python-wrapt
* gnu/packages/python.scm (python-wrapt, python2-wrapt): New variables.
gnu: Add python-oslo.config.
* gnu/packages/openstack.scm (python-oslo.config, python2-oslo.config): New variables.
gnu: Add python-stevedore.
* gnu/packages/openstack.scm (python-stevedore, python2-stevedore): New variables.
gnu: Add python-netaddr.
* gnu/packages/python.scm (python-netaddr, python2-netaddr): New variables.
gnu: Add cvs-fast-export.
* gnu/packages/version-control.scm (cvs-fast-export): New variable.
gnu: gnupg: Update to 2.1.8.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.8.
gnu: cpio: Upgrade to 2.12.
* gnu/packages/cpio.scm (cpio): Update to 2.12.
[source]: Remove 'patches' field.
* gnu/packages/patches/cpio-CVE-2014-9112-pt1.patch,
gnu/packages/patches/cpio-CVE-2014-9112-pt2.patch,
gnu/packages/patches/cpio-CVE-2014-9112-pt3.patch,
gnu/packages/patches/cpio-CVE-2014-9112-pt4.patch,
gnu/packages/patches/cpio-CVE-2014-9112-pt5.patch,
gnu/packages/patches/cpio-fix-symlink-bad-length-test.patch: Remove.
* gnu-system.am (dist_patch_DATA): Remove.
gnu: tiled: Update to 0.13.1.
* gnu/packages/game-development.scm (tiled): Update to 0.13.1.
gnu: redis: Update to 3.0.4
* gnu/packages/databases.scm (redis): Update to 3.0.4.
gnu: Add lz4.
* gnu/packages/compression.scm (lz4): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>