gnu: aquamarine: Update to 0.5.1. * gnu/packages/xdisorg.scm (aquamarine): Update to 0.5.1. Signed-off-by: John Kehayias <john.kehayias@protonmail.com> Change-Id: If5e5673f98329c1e95d06f99074bb9dca38d5ca3
gnu: hyprutils: Update to 0.2.6. * gnu/packages/cpp.scm (hyprutils): Update to 0.2.6. Signed-off-by: John Kehayias <john.kehayias@protonmail.com> Change-Id: I34a54b5110fc1a74ff9d2e6989d954c8f8ffce78
gnu: Add hyprgraphics. * gnu/packages/cpp.scm (hyprgraphics): New variable. Signed-off-by: John Kehayias <john.kehayias@protonmail.com> Change-Id: I592fdb92f136f2d05c09897fea7c554c30131bec
gnu: python-hmmlearn: Add missing inputs. * gnu/packages/machine-learning.scm (python-hmmlearn)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Idd474162534bf8dbbc6e4a9772a2748862e0b045
gnu: python-scanpy: Ignore plotting tests. * gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Also ignore tests from test_plotting.py. Change-Id: I5d2ebb3764e57c5f348be2b3555db99a2ee6ee4f
gnu: python-scanpy: Use more test-flags. * gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Remove phase 'delete-bad-tests and use #:test-flags instead; add phase 'discover-anndata. Change-Id: Idb5bd59a2bba968fbec820603938802cf9443bad
gnu: python-jupyter-server: Do not propagate old dataclasses. * gnu/packages/jupyter.scm (python-jupyter-server)[propagated-inputs]: Replace python-anyio with python-anyio/without-dataclasses. Change-Id: I20737b7d3199b34b155838c75bd19de82d78e1c5
gnu: Add python-anyio/without-dataclasses. * gnu/packages/python-xyz.scm (python-anyio/without-dataclasses): New variable. Change-Id: I40ae9aa7a85f0fe7642dc3b75f3ef9cde17f064f
gnu: python-zarr: Disable one test. * gnu/packages/python-xyz.scm (python-zarr)[arguments]: Disable one more test. Change-Id: I3733078b878fa60c4e382dfca39fcef64cefa1ae
gnu: python-awkward-cpp: Relax dependency on python-scikit-build-core. * gnu/packages/python-xyz.scm (python-awkward-cpp)[arguments]: Add phase 'relax-requirements. Change-Id: I3d4f647f6e5eecd343de4219baf20c6e38a2a5a0
gnu: python-hicmatrix: Work around defect in python-tables. * gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2. [arguments]: Add phase 'find-blosc2. Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
gnu: jupyter: Skip sanity check. This is temporary and will be removed on the python-team branch. * gnu/packages/python-xyz.scm (jupyter)[arguments]: Delete 'sanity-check phase. Change-Id: I715d9161d7f23c1f72125aea8b4c0e1bb5490b1e
gnu: python-notebook: Skip sanity check. This is temporary and will be removed on the python-team branch. * gnu/packages/python-xyz.scm (python-notebook)[arguments]: Delete 'sanity-check phase. Change-Id: I23d69c852fd9de98c010cce82b09ac541c0e2121
gnu: python-nbclassic: Skip sanity check. This is temporary and will be removed on the python-team branch. * gnu/packages/jupyter.scm (python-nbclassic)[arguments]: Delete 'sanity-check phase. Change-Id: I8a3190a849d192d9c7f1b2e903b55705622671f8
gnu: python-zarr: Update to 2.18.4. * gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.4. [arguments]: Add phase 'set-version. [propagated-inputs]: Add python-ipywidgets, python-notebook, python-numpydoc, and python-pydata-sphinx-theme. [native-inputs]: Remove python-fsspec, python-h5py, python-pytest-timeout, and python-setuptools-scm; add python-sphinx, python-sphinx-copybutton, python-sphinx-design, python-sphinx-issues, and python-setuptools. Change-Id: I707da0087b8aa6cf57be4e5dd9019b24620f101f
gnu: python-awkward: Update to 2.7.2. * gnu/packages/python-xyz.scm (python-awkward): Update to 2.7.2. [arguments]: Skip three broken tests. Change-Id: Ifdfcda9c57b9b27e9c3b5e0b05c7896d552b30cd
gnu: python-awkward-cpp: Update to 43. * gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 43. [propagated-inputs]: Remove python-importlib-resources. Change-Id: I7201a31d49287f9a656f53fff953ebb593620712
gnu: python-pybedtools: Update to 0.10.0. * gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.10.0. [arguments]: Use #:test-flags to disable one test instead of patching test files in 'disable-broken-tests phase; add new phases 'fix-references and 'build-extensions. [propagated-inputs]: Remove python-matplotlib; add kentutils, python-numpy, python-pandas, and python-psutil. [inputs]: Add zlib. [native-inputs]: Remove python-numpy, python-pandas, python-psutil, python-six, and kentutils. Change-Id: I62948b1f3169f93f752896fdf02d2887740e98cc
gnu: python-upsetplot: Add missing inputs. * gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
gnu: pinebook-pro-image-type: augment partition offset. * gnu/system/images/pinebook-pro.scm: augment partition offset to make room for the bootloader. Change-Id: I91a3758243a13960165d40b94efe017e6e059a22 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>