gnu: Add python-anyio/without-dataclasses. * gnu/packages/python-xyz.scm (python-anyio/without-dataclasses): New variable. Change-Id: I40ae9aa7a85f0fe7642dc3b75f3ef9cde17f064f
gnu: python-zarr: Disable one test. * gnu/packages/python-xyz.scm (python-zarr)[arguments]: Disable one more test. Change-Id: I3733078b878fa60c4e382dfca39fcef64cefa1ae
gnu: python-awkward-cpp: Relax dependency on python-scikit-build-core. * gnu/packages/python-xyz.scm (python-awkward-cpp)[arguments]: Add phase 'relax-requirements. Change-Id: I3d4f647f6e5eecd343de4219baf20c6e38a2a5a0
gnu: python-hicmatrix: Work around defect in python-tables. * gnu/packages/bioinformatics.scm (python-hicmatrix)[inputs]: Add c-blosc2. [arguments]: Add phase 'find-blosc2. Change-Id: I02ea5e36c24b8da330f763aae07b1616e002ed9a
gnu: jupyter: Skip sanity check. This is temporary and will be removed on the python-team branch. * gnu/packages/python-xyz.scm (jupyter)[arguments]: Delete 'sanity-check phase. Change-Id: I715d9161d7f23c1f72125aea8b4c0e1bb5490b1e
gnu: python-notebook: Skip sanity check. This is temporary and will be removed on the python-team branch. * gnu/packages/python-xyz.scm (python-notebook)[arguments]: Delete 'sanity-check phase. Change-Id: I23d69c852fd9de98c010cce82b09ac541c0e2121
gnu: python-nbclassic: Skip sanity check. This is temporary and will be removed on the python-team branch. * gnu/packages/jupyter.scm (python-nbclassic)[arguments]: Delete 'sanity-check phase. Change-Id: I8a3190a849d192d9c7f1b2e903b55705622671f8
gnu: python-zarr: Update to 2.18.4. * gnu/packages/python-xyz.scm (python-zarr): Update to 2.18.4. [arguments]: Add phase 'set-version. [propagated-inputs]: Add python-ipywidgets, python-notebook, python-numpydoc, and python-pydata-sphinx-theme. [native-inputs]: Remove python-fsspec, python-h5py, python-pytest-timeout, and python-setuptools-scm; add python-sphinx, python-sphinx-copybutton, python-sphinx-design, python-sphinx-issues, and python-setuptools. Change-Id: I707da0087b8aa6cf57be4e5dd9019b24620f101f
gnu: python-awkward: Update to 2.7.2. * gnu/packages/python-xyz.scm (python-awkward): Update to 2.7.2. [arguments]: Skip three broken tests. Change-Id: Ifdfcda9c57b9b27e9c3b5e0b05c7896d552b30cd
gnu: python-awkward-cpp: Update to 43. * gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 43. [propagated-inputs]: Remove python-importlib-resources. Change-Id: I7201a31d49287f9a656f53fff953ebb593620712
gnu: python-pybedtools: Update to 0.10.0. * gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.10.0. [arguments]: Use #:test-flags to disable one test instead of patching test files in 'disable-broken-tests phase; add new phases 'fix-references and 'build-extensions. [propagated-inputs]: Remove python-matplotlib; add kentutils, python-numpy, python-pandas, and python-psutil. [inputs]: Add zlib. [native-inputs]: Remove python-numpy, python-pandas, python-psutil, python-six, and kentutils. Change-Id: I62948b1f3169f93f752896fdf02d2887740e98cc
gnu: python-upsetplot: Add missing inputs. * gnu/packages/python-science.scm (python-upsetplot)[native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ibddb6f183345af29dfce218145c7c8c83aa9c244
gnu: pinebook-pro-image-type: augment partition offset. * gnu/system/images/pinebook-pro.scm: augment partition offset to make room for the bootloader. Change-Id: I91a3758243a13960165d40b94efe017e6e059a22 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: Add python-sphinx-inline-tabs. * gnu/packages/sphinx.scm (python-sphinx-inline-tabs): New variable. Change-Id: I92516cdc404cdcaee74cb8cf19f255c049c43021 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: pari-gp: Install galdata. * gnu/packages/algebra.scm (pari-galdata): New variable. (pari-gp)[arguments]<#:phases>: Add phase "install-galdata". Change-Id: Iaec77b0ab60d8ff59c8a36e7e0a7878b58742751 Co-authored by: Vinicius Monego <monego@posteo.net> Change-Id: Id74aa6ce315df48a2d917baf1a436ba54b1b5185 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: pari-gp: Use G-Expressions. * gnu/packages/algebra.scm (pari-gp)[arguments]: Use G-Expressions. Unset make-flags. Change-Id: Id2be46acd67b474d6fdb8935070ffb243e87f920 Co-authored by: Vinicius Monego <monego@posteo.net> Change-Id: I7be07998e9e2d1fe9194d4af6a57537467f5e097 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: Add tachyon. * gnu/packages/graphics.scm (tachyon): New variable. Change-Id: I57780c08c6b496e40459789d693b9b24fb4a9da8 Co-authored by: Vinicius Monego <monego@posteo.net> Change-Id: I5914afad8d293787b9898a229084e6c79fbe8911 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: Add palp. * gnu/packages/maths.scm (palp): New variable. Change-Id: I37ee870858fef505999dfdc02d1955673366d718 Co-authored by: Vinicius Monego <monego@posteo.net> Change-Id: I853cbccca5c34355d9df74a3cbbd5f818a21ebb5 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: Add gfan. * gnu/packages/maths.scm (gfan): New variable. Change-Id: I3b4952ddfcaecac17ab29bb3cd2f56fc125ab763 Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>
gnu: Add sympow. * gnu/packages/maths.scm (sympow): New variable. Change-Id: Iaeaea352f0a3a65a877b2845ecdc18856ded6d3c Signed-off-by: Danny Milosavljevic <dannym@friendly-machines.com>