gnu: global: Update to 6.5.2. * gnu/packages/code.scm (global): Update to 6.5.2.
gnu: icedtea-6: Fix directory name in "unpack" phase. * gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory prefix in the "unpack" phase to "icedtea6-".
gnu: linux-libre: Update to 4.4. * gnu/packages/linux.scm (linux-libre): Update to 4.4. * gnu/packages/linux-libre-i686.conf, gnu/packages/linux-libre-x86_64.conf: Update from <https://jxself.org/git/kernel-configs.git>.
gnu: Add fxtract. * gnu/packages/bioinformatics.scm (fxtract): New variable.
gnu: youtube-dl: Update to 2016.01.09. * gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
gnu: gp2c: Update to 0.0.9pl5. * gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
gnu: texlive: Use modify-phases syntax. * gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases syntax.
gnu: man-pages: Update to 4.04. * gnu/packages/man.scm (man-pages): Update to 4.04. [source]: Add alternate location.
build: Fix out-of-tree building of documentation. * doc.am (.dot.png, .dot.pdf, .dot.eps): Put the generated files into $(srcdir).
gnu: bedtools: Update to 2.25.0. * gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0. [source]: Remove patch merged upstream. [arguments]: Use 'modify-phases'. Remove 'patch-makefile-SHELL-definition' phase. * gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
gnu: bedtools: Use modify-phases. * gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
gnu: r: Update to 3.2.3. * gnu/packages/statistics.scm (r): Update to 3.2.3.
gnu: icecat: Update to 38.5.2-gnu1. * gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
gnu: ruby-2.1: Update to 2.1.8. * gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
gnu: i2c-tools: Update source and home-page URLs. * gnu/packages/linux.scm (i2c-tools)[source]: Update URL. [home-page]: Update URL.
gnu: lm-sensors: Update source and home-page URLs. * gnu/packages/linux.scm (lm-sensors)[source]: Update URL. [home-page]: Update URL.
gnu: nss: Update to 3.21 [fixes CVE-2015-7575]. * gnu/packages/gnuzilla.scm (nss): Update to 3.21. [arguments]: In configure phase, setenv CC=gcc. * gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
build-system/python: 'pypi-uri' takes an optional file name extension. Suggested by swedebugia <swedebugia@riseup.net>. * guix/build-system/python.scm (pypi-uri): Add 'extension' parameter and use it.
gnu: Add missing (gnu packages gcc) import. * gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is required by 'r-impute' for 'gfortran'.
gnu: xterm: Update to 322. * gnu/packages/xorg.scm (xterm): Update to 322.