gnu: texlive: Use modify-phases syntax.
* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
syntax.
gnu: man-pages: Update to 4.04.
* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
build: Fix out-of-tree building of documentation.
* doc.am (.dot.png, .dot.pdf, .dot.eps): Put the generated files into
$(srcdir).
gnu: bedtools: Update to 2.25.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
gnu: bedtools: Use modify-phases.
* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
gnu: r: Update to 3.2.3.
* gnu/packages/statistics.scm (r): Update to 3.2.3.
gnu: icecat: Update to 38.5.2-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
gnu: ruby-2.1: Update to 2.1.8.
* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
gnu: i2c-tools: Update source and home-page URLs.
* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
gnu: lm-sensors: Update source and home-page URLs.
* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
build-system/python: 'pypi-uri' takes an optional file name extension.
Suggested by swedebugia <swedebugia@riseup.net>.
* guix/build-system/python.scm (pypi-uri): Add 'extension' parameter and
use it.
gnu: Add missing (gnu packages gcc) import.
* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
gnu: xterm: Update to 322.
* gnu/packages/xorg.scm (xterm): Update to 322.
gnu: epiphany: Update to 3.18.2.
* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
gnu: webkitgtk: Update to 2.10.4.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
doc: Document network-manager-service.
* doc/guix.texi (Networking Services): Document network-manager-service.
doc: Add elaborate package search example.
* doc/guix.texi (Invoking guix package): Add elaborate --search example
using recsel and sexes.
gnu: Add Pfff.
* gnu/packages/textutils.scm (pfff): New variable.