gnu: Add r-trimcluster. * gnu/packages/statistics.scm (r-trimcluster): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-robustbase. * gnu/packages/statistics.scm (r-robustbase): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-deoptimr. * gnu/packages/statistics.scm (r-deoptimr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-prabclus. * gnu/packages/statistics.scm (r-prabclus): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-mclust. * gnu/packages/statistics.scm (r-mclust): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-flexmix. * gnu/packages/statistics.scm (r-flexmix): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-modeltools. * gnu/packages/statistics.scm (r-modeltools): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-diptest. * gnu/packages/statistics.scm (r-diptest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add obnam. * gnu/packages/backup.scm (obnam): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
gnu: icestorm: Replace reference in icebox_vlog. * gnu/packages/fpga.scm (icestorm)[arguments]: Add phase "fix-usr-local" to replace reference to /usr/local/share.
gnu: dub: Update to 1.2.2. * gnu/packages/ldc.scm (dub): Update to 1.2.2.
services: openssh: Fix 'PrintLastLog' default behaviour. * gnu/services/ssh.scm (openssh-config-file): Add 'print-last-log?' option. (<openssh-configuration>)[print-last-log?]: Add it. (openssh-activation): Touch /var/log/lastlog. * doc/guix.texi (Networking Services): Document 'print-last-log?'. Before that, the service did not work as expected because /var/log/lastlog did not exist. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
services: openssh: Remove deprecated options. * gnu/services/ssh.scm (openssh-config-file): Remove them. (<openssh-configuration>)[rsa-authentication?]: Remove it. (<openssh-configuration>)[protocol-number]: Remove it. * doc/guix.texi (Networking Services): Remove them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
services: openssh: Enable PAM. * gnu/services/ssh.scm: (openssh-pam-services): New procedure. (openssh-service-type): Use it to extend PAM-ROOT-SERVICE-TYPE. (<openssh-configuration>)[challenge-response-authentication?]: New field. (<openssh-configuration>)[use-pam?]: New field. (openssh-config-file): Add them. * doc/guix.texi (Networking Services): Document them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
system: Avoid '_' as a pattern variable in 'match'. * gnu/system.scm (operating-system-root-file-system): Don't use '_' as a wildcard in 'match', to cope with literal semantics in 2.2.
services: Create /var/log upon activation. When launching a container created with guix system container, the attempt to create /var/log/wtmp would fail, as /var/log did not exist. * gnu/services.scm (activation-script): Create /var/log Co-authored-by: Ludovic Courtès <ludo@gnu.org>
services: Add exim-service-type. * gnu/services/mail.scm (<exim-configuration>): New record type. (exim-computed-config-file, exim-shepherd-service, exim-activation, exim-etc, exim-profile): New procedures. (exim-service-type, %exim-accounts): New variables. * doc/guix.text (Mail Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: hmmer: Build reproducibly. * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
gnu: Add sambamba. * gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640]. * gnu/packages/messaging.scm (pidgin): Update to 2.12.0.