gnu: Add r-prabclus.
* gnu/packages/statistics.scm (r-prabclus): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-mclust.
* gnu/packages/statistics.scm (r-mclust): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-flexmix.
* gnu/packages/statistics.scm (r-flexmix): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-modeltools.
* gnu/packages/statistics.scm (r-modeltools): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add r-diptest.
* gnu/packages/statistics.scm (r-diptest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
gnu: Add obnam.
* gnu/packages/backup.scm (obnam): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
gnu: icestorm: Replace reference in icebox_vlog.
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase
"fix-usr-local" to replace reference to /usr/local/share.
gnu: dub: Update to 1.2.2.
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
services: openssh: Fix 'PrintLastLog' default behaviour.
* gnu/services/ssh.scm (openssh-config-file): Add 'print-last-log?' option.
(<openssh-configuration>)[print-last-log?]: Add it.
(openssh-activation): Touch /var/log/lastlog.
* doc/guix.texi (Networking Services): Document 'print-last-log?'.
Before that, the service did not work as expected because /var/log/lastlog did
not exist.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
services: openssh: Remove deprecated options.
* gnu/services/ssh.scm (openssh-config-file): Remove them.
(<openssh-configuration>)[rsa-authentication?]: Remove it.
(<openssh-configuration>)[protocol-number]: Remove it.
* doc/guix.texi (Networking Services): Remove them.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
services: openssh: Enable PAM.
* gnu/services/ssh.scm: (openssh-pam-services): New procedure.
(openssh-service-type): Use it to extend PAM-ROOT-SERVICE-TYPE.
(<openssh-configuration>)[challenge-response-authentication?]: New field.
(<openssh-configuration>)[use-pam?]: New field.
(openssh-config-file): Add them.
* doc/guix.texi (Networking Services): Document them.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
system: Avoid '_' as a pattern variable in 'match'.
* gnu/system.scm (operating-system-root-file-system): Don't use '_' as a
wildcard in 'match', to cope with literal semantics in 2.2.
services: Create /var/log upon activation.
When launching a container created with guix system container, the
attempt to create /var/log/wtmp would fail, as /var/log did not exist.
* gnu/services.scm (activation-script): Create /var/log
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
services: Add exim-service-type.
* gnu/services/mail.scm (<exim-configuration>): New record type.
(exim-computed-config-file, exim-shepherd-service, exim-activation, exim-etc,
exim-profile): New procedures.
(exim-service-type, %exim-accounts): New variables.
* doc/guix.text (Mail Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: hmmer: Build reproducibly.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
gnu: Add sambamba.
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New
variables.
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet'
and '--with-lmdb'.
[inputs]: Add 'lmdb' and 'kyotocabinet'.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
gnu: neomutt: Update to 20170306.
* gnu/packages/mail.scm (neomutt): Update to 20170306.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>