gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.

* gnu/packages/astronomy.scm (python-sunkit-spex): Update to
bb544c44573d6de44e3d5ba08d06cab0059a4db7 commit.
[arguments] <phases>: Remove 'pre-check; keep 'sanity-check.
[propagated-inputs]: Remove python-ndim, python-orthopy, and
python-quadpy; add python-gwcs, python-ndcube, and python-numpy.
[native-inputs]: Remove python-wheel.

Change-Id: Ib59e964b5bfa9804df3ed1b38181ad36dfa8ec25
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-numdifftools: Update to 0.9.42.

* gnu/packages/python-science.scm (python-numdifftools): Update to 0.9.42.
[arguments] <test-flags>: Keep only exclusion markers.
<phases>: Remove 'relax-requirements; add 'fix-pytest-config.
[propagated-inputs]: Add python-matplotlib.
[native-inputs]: Remove python-setuptools, python-setuptools-scm, and
python-wheel; add python-pdm-backend.

Change-Id: I87bdd34812df8771f53dd2ab8cfc4634ffb0b07d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-meshio: Skip some tests.

* gnu/packages/simulation.scm (python-meshio)[arguments]<test-flags>:
Skip some NumPy incompatible failing tests.

Change-Id: I48e782b7eb2920c12777bda20a1f3d2753fcf657
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-lofar-h5plot: Use python-numpy@1.

* gnu/packages/astronomy.scm (python-lofar-h5plot):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-wheel.

Change-Id: I1fef6da8cfbc24b85619b5d624d25feb371e7f91
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-losoto: Update to 2.6.0.

* gnu/packages/astronomy.scm (python-losoto): Update to 2.6.0.
[arguments] <tests?>: Disable for now.
<phases>: Add 'set-version, and 'relax-requirements.
[propagated-inputs]: Remove python-configparser; add
python-lofar-parameterset and python-progressbar2.
[native-inputs]: Remove python-cython and python-wheel; add
python-pytest and python-setuptools-scm.

Change-Id: I314f87b68e3b475c90a59adb94ce904408f90be3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: Add python-lofar-parameterset.

* gnu/packages/astronomy.scm (python-lofar-parameterset): New variable.

Change-Id: I37c14d916f99a6dc3063e0ad2b9ab15e3759a283
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-glue-astronomy: Skip 3 tests.

* gnu/packages/astronomy.scm (python-glue-astronomy): Skip 3 tests.

Change-Id: I6d5099af4f6c396701ccdcef1439167f5ef9e23f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-seaborn: Skip 3 tests.

* gnu/packages/python-xyz.scm (python-seaborn)[arguments] <test-flags>:
Skip 3 tests.

Change-Id: I32ea08c88eadddf1afcbcab51f813ea5a79f8481
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: veusz: Update to 4.2.

* gnu/packages/maths.scm (veusz): Update to 4.2.
[inputs]: Add python-numpy.
[propagated-inputs]: Remove python-numpy.
[native-inputs]: Remove python-astropy and python-wheel.

Change-Id: Id1258513cc7c7f0ebad71e523f23e37a59cc42ce
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: websockify: Update to 0.13.0.

* gnu/packages/web.scm (websockify): Update to 0.13.0.
[inputs]: Remove python-simplejson.
[native-inputs]: Remove python-wheel.

Change-Id: Iad153e094a7863e58f75ef58ecb1f9e61a56a112
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-jwcrypto: Adjust inputs.

* gnu/packages/python-web.scm (python-jwcrypto)[propagated-inputs]:
Remove python-deprecated; add python-typing-extensions.

Change-Id: I0eda45ecdb99e98d7841482fb77c390014a53e2b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-modin: Update to 0.37.1.

* gnu/packages/python-science.scm (python-modin): Update to 0.37.1.
[arguments] <test-flags>: Rework options.
<phases>: Remove 'loosen-requirements; add 'versioneer, and
'fix-pytest-config; rework {check} phase to include some API tests
scenarios.
[propagated-inputs]: Remove python-cloudpickle and python-s3fs; add
python-fsspec, python-psutil, and python-typing-extensions.
[native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib,
python-msgpack, python-openpyxl, python-psutil, python-pyarrow,
python-pytest-benchmark, python-pytest-cov, python-scipy,
python-sqlalchemy, python-tables, python-tqdm, python-xarray,
python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and
python-versioneer.

Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-pyopengl: Skip one test.

* gnu/packages/python-graphics.scm (python-pyopengl)[arguments]
<test-flags>: Skip one more test.

Change-Id: I9ed0fb8093f3429fd7bb2f0ad5e2f26220300736
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-cleanlab: Fix build.

* gnu/packages/machine-learning.scm (python-cleanlab)[arguments]
<test-flags>: Skip one more test.
<phases>: Add 'relax-requirements.
[native-inputs]: Remove python-wheel; add python-matplotlib.

Change-Id: I10e9d8a2eadc2de6d26f6247dc5e2305a215bd91
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-arviz: Update to 0.22.0.

* gnu/packages/statistics.scm (python-arviz): Update to 0.22.0.
[arguments] <test-flags>: Run base tests only, deselect 10 tests.
<phases>: Remove 'remove-radon, and 'write-permission; add 'pre-check.
[propagated-inputs]: Remove python-dm-tree, python-setuptools, and
python-wheel.
[native-inputs]: Add python-setuptools.

Change-Id: If8ab6c9917cb19463ab07935709d9d2f10c2329a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-arboreto: Update to 0.1.6-0.79f916b.

* gnu/packages/bioinformatics.scm (python-arboreto): Update to
79f916b0ea25c00989331b8db243826049c3d66c commit.
[arguments] <tests?, test-backend> Enable.
<phases>: Add 'disable-failing-tests.
[propagated-inputs]: Remove python-lz4, python-pyarrow, and
python-tornado-6.
[native-inputs]: Remove python-wheel.

Change-Id: If380a31f7a27832c0e0fd1dda80d5dfd3e539345
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-naima: Update to 0.10.3.

* gnu/packages/astronomy.scm (python-naima): Update to 0.10.3.
[native-inputs]: Remove python-setuptools, python-setuptools-scm, and
python-wheel; add python-hatch-vcs and python-hatchling.
[propagated-inputs]: Add python-numpy.

Change-Id: I91676156429f90237190f15cd1a7429ff31b4026
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-xarray-einstats: Update to 0.9.1.

* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.9.1.
[propagated-inputs]: Add python-einops and python-numba.
[native-inputs]: Remove python-einops and python-numba.

Change-Id: Ic3e05114dc3d6343523aec222f527ef9653ed2d6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-spectral-cube: Update to 0.6.7.

* gnu/packages/astronomy.scm (python-spectral-cube): Update to 0.6.7.
[arguments] <tests?, test-flags>: Enable, skip 5 tests.
[propagated-inputs]: Remove python-aplpy, python-distributed,
python-fsspec, python-matplotlib, python-pvextractor-bootstrap, and
python-reproject.
[native-inputs]: Remove python-wheel; add python-pytest,
python-pytest-astropy, python-pytest-xdist, and python-setuptools.

Change-Id: Ib34388a456f50d4296218c521e0a2af34a395362
Signed-off-by: Rutherther <rutherther@ditigal.xyz>

gnu: python-reproject: Update to 0.19.0.

* gnu/packages/astronomy.scm (python-reproject): Update to 0.19.0.
[arguments] <test-flags>: Read options from pyproject.toml, skip 3 shaky
tests.
[inputs]: Remove python-asdf, python-gwcs, python-pyvo, python-shapely, and
python-sunpy-minimal.
[propagated-inputs]: Remove python-cloudpickle; add python-dask-image,
python-pillow, and python-pyavm.
[native-inputs]: Add python-asdf, python-gwcs, python-pyvo,
python-shapely, and python-sunpy-minimal.

Change-Id: I50792fc53a1e9d661704da1fe080b01c29bf1fb5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>