gnu: scregseg: Patch for numpy compatibility.

* gnu/packages/bioinformatics.scm (scregseg)[arguments]: Add phase
'compatibility.

Change-Id: I738d675c10acdbae7d40b3f806703ba8f7936a19

gnu: python-voila: Update to 0.5.8.

* gnu/packages/jupyter.scm (python-voila): Update to 0.5.8.
[build-system]: Use pyproject-build-system.
[arguments]: Disable one test; remove phase 'relax-requirements; remove custom
'check phase; add phases 'prepare-css and 'install-extensions.
[native-inputs]: Add python-hatchling, python-hatch-jupyter-builder, and a
number of additional origins.

Change-Id: Id09a8cec5fedc77596315ffc662f0789a84e179a

gnu: python-episcanpy: Add missing input.

* gnu/packages/bioinformatics.scm (python-episcanpy)[native-inputs]: Add
python-wheel.

Change-Id: Iba4ac520faf00e3db64df3532752b1de3eec1bc6

gnu: python-celltypist: Add missing input.

* gnu/packages/bioinformatics.scm (python-celltypist)[native-inputs]: Add
python-wheel.

Change-Id: Ife136efe1d6f734951dde25e950148d3d7057d64

gnu: python-metacells: Update to 0.9.5.

* gnu/packages/bioinformatics.scm (python-metacells): Update to 0.9.5.
[native-inputs]: Add python-pandas-stubs and python-setuptools.

Change-Id: I25d28d0ebbb689c2561e25fec94cf4911c7f5158

gnu: python-scanpy: Patch anndata version check.

* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Add phase
'patch-version-check.

Change-Id: I0d2262197ae05c785fc65bd22e8052764434cab3

gnu: python-metacells: Add missing input.

* gnu/packages/bioinformatics.scm (python-metacells)[native-inputs]: Add
python-wheel.

Change-Id: I5ca117071b43bad1942f499795001fe8bc641546

gnu: python-fastcluster: Add missing inputs.

* gnu/packages/python-science.scm (python-fastcluster)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I2fa034054f5183e04c2f1e673f841f07799a7b94

gnu: python-apscheduler: Add missing inputs.

* gnu/packages/python-xyz.scm (python-apscheduler)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I777d0c0d2c758d7ec3385a11432c3e9cc16877f1

gnu: python-cvxpy: Add missing input.

* gnu/packages/python-science.scm (python-cvxpy)[native-inputs]: Add
python-wheel.

Change-Id: I66f4f504a0a4101abc845b7b7d0a0fccbd6b91b9

gnu: python-scikit-survival: Add missing input.

* gnu/packages/python-science.scm (python-scikit-survival)[native-inputs]: Add
python-setuptools.

Change-Id: I52e98c787cec226590f21c98e4287a41fb41f3d3

gnu: python-qdldl: Add missing input.

* gnu/packages/python-science.scm (python-qdldl)[native-inputs]: Add
python-wheel.

Change-Id: I6bca560b20a9c259eae95c09edcf10ead685ec21

gnu: python-osqp: Add missing inputs.

* gnu/packages/python-science.scm (python-osqp)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Ief43d97442a98935dea1499c67e022e9beb5359e

gnu: python-scikit-learn-extra: Disable one test.

* gnu/packages/machine-learning.scm (python-scikit-learn-extra)
[arguments]: Disable one test.

Change-Id: Idee17402250a55ca564724f00550ef36664982f6

gnu: python-scikit-fuzzy: Add missing inputs.

* gnu/packages/python-science.scm (python-scikit-fuzzy)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: Idbaf5fa622b3584f8fd348ec0783605936d3bf41

gnu: python-scikit-allel: Update to 1.3.13.

* gnu/packages/python-science.scm (python-scikit-allel): Update to 1.3.13.
[propagated-inputs]: Remove python-click.
[native-inputs]: Remove python-scipy.

Change-Id: I3c29bd3d9f87d0866da747c344740bad71cae1c3

gnu: python-resolvelib: Update to 1.1.0b1.

* gnu/packages/python-xyz.scm (python-resolvelib): Update to 1.1.0b1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ida8eb599bcfc02e84fc95ac276fba4ba217a6511

gnu: python-resampy: Update to 0.4.3.

* gnu/packages/audio.scm (python-resampy): Update to 0.4.3.
[arguments]: Remove.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I79d0a460d4646c5fde3aec9314d9ccc6380002de

gnu: python-pytest-tornado5: Add missing inputs.

* gnu/packages/check.scm (python-pytest-tornado5)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I0b64ac5f3e50893cb3fab518c9779d2cd7b9c6a9

gnu: Remove python-pathlib.

This package is obsolete, the module it provides is part of the standard
library, and the package has no users.

* gnu/packages/python-xyz.scm (python-pathlib): Remove variable.

Change-Id: I8c724ba7b62ad5602f6abdb4e5fdaf2806180ab5