~ruther/guix-local

38bb9df1 — Marius Bakke 8 years ago 
gnu: tdb: Update to 1.3.14.

* gnu/packages/databases.scm (tdb): Update to 1.3.14.
09efef33 — Marius Bakke 8 years ago 
gnu: python-scipy: Update to 0.19.1.

* gnu/packages/python.scm (python-scipy): Update to 0.19.1.
[source]: Use 'pypi-uri'.
71d20587 — Marius Bakke 8 years ago 
gnu: python-matplotlib: Update to 2.0.2.

* gnu/packages/python.scm (python-matplotlib): Update to 2.0.2.
[source]: Use 'pypi-uri'.
9e5ee6b6 — Marius Bakke 8 years ago 
gnu: python-pyparsing: Update to 2.2.0.

* gnu/packages/python.scm (python-pyparsing, python2-pyparsing): Update to
2.2.0.
007176e7 — Marius Bakke 8 years ago 
gnu: python-pyparsing: Use 'modify-phases' syntax.

* gnu/packages/python.scm (python-pyparsing)[arguments]<#:phases>: Use
'modify-phases'.
6e864d00 — Oleg Pykhalov 8 years ago 
gnu: Add xmobar.

gnu/packages/wm.scm (xmobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
8f155e3c — Efraim Flashner 8 years ago 
gnu: bash-completion: Update to 2.7.

* gnu/packages/bash.scm (bash-completion): Update to 2.7.

gnu: getmail: Update to 5.1.

* gnu/packages/mail.scm (getmail): Update to 5.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
f3f68a44 — Ben Woodcroft 8 years ago 
gnu: metabat: Update to 2.11.1.

* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.1.
[source]: Add patch to fix compilation.
[arguments]: Adjust regular expressions modifying 'SConstruct'.
* gnu/packages/patches/metabat-fix-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
897ab082 — Ben Woodcroft 8 years ago 
gnu: python-plastid: Update to 0.4.8.

* gnu/packages/bioinformatics.scm (python-plastid): Update to 0.4.8.
0620387a — Ben Woodcroft 8 years ago 
gnu: bcftools: Update to 1.5.

* gnu/packages/bioinformatics.scm (bcftools): Update to 1.5.
[origin]: Remove fix-makefile patch.
[arguments]: Add configure flags, add LIBS make flag.  Do not delete
configure phase.
* gnu/packages/patches/bcftools-fix-makefile.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
63fa0ffc — Ben Woodcroft 8 years ago 
gnu: samtools: Update to 1.5.

* gnu/packages/bioinformatics.scm (samtools): Update to 1.5.
4fb6d128 — Ben Woodcroft 8 years ago 
gnu: htslib: Update to 1.5.

* gnu/packages/bioinformatics.scm (htslib): Update to 1.5.
60739965 — Ben Woodcroft 9 years ago 
gnu: python-pysam: Update to 0.11.2.2.

* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.11.2.2.
bca2c576 — Ben Woodcroft 8 years ago 
gnu: bamm: Use htslib-1.3.

* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
98593f9f — Ben Woodcroft 9 years ago 
gnu: bcftools: Update to 1.4.1.

* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
4ab16440 — Ben Woodcroft 9 years ago 
gnu: samtools: Update to 1.4.1.

* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
a9e4a1e6 — Ben Woodcroft 9 years ago 
gnu: htslib: Update to 1.4.1.

* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
c842d425 — Ben Woodcroft 9 years ago 
gnu: samtools: Use "modify-phases" syntax.

* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.

gnu: bspwm: Update to 0.9.3.

* gnu/packages/wm.scm (bspwm): Update to 0.9.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
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