~ruther/guix-local

bca2c576 — Ben Woodcroft 9 years ago 
gnu: bamm: Use htslib-1.3.

* gnu/packages/bioinformatics (htslib-1.3): New variable.
(bamm)[inputs]: Replace htslib with htslib-1.3.
98593f9f — Ben Woodcroft 9 years ago 
gnu: bcftools: Update to 1.4.1.

* gnu/packages/bioinformatics.scm (bcftools): Update to 1.4.1.
[arguments]: Move Makefile modifications from here ...
[source]: ... to added patch.  Adjust patch for update to 1.4.
* gnu/packages/patches/bcftools-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
4ab16440 — Ben Woodcroft 9 years ago 
gnu: samtools: Update to 1.4.1.

* gnu/packages/bioinformatics.scm (samtools): Update to 1.4.1.
[arguments]: Add '--with-htslib=system' configure flag.
[inputs]: Add htslib.
a9e4a1e6 — Ben Woodcroft 9 years ago 
gnu: htslib: Update to 1.4.1.

* gnu/packages/bioinformatics.scm (htslib): Update to 1.4.1.
[inputs]: Add curl, openssl.
c842d425 — Ben Woodcroft 9 years ago 
gnu: samtools: Use "modify-phases" syntax.

* gnu/packages/bioinformatics.scm (samtools)[arguments]: Use "modify-phases"
syntax.
c62d1a6e — nikita 9 years ago 
gnu: bspwm: Update to 0.9.3.

* gnu/packages/wm.scm (bspwm): Update to 0.9.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
7e3c977d — nikita 9 years ago 
gnu: Add oksh.

* gnu/packages/shells.scm (oksh): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
36378bd5 — Ryan Moe 9 years ago 
gnu: quassel: Enable TLS.

* gnu/packages/patches/quassel-fix-tls-check.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/irc.scm (quassel)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
e7452214 — Tobias Geerinckx-Rice 9 years ago 
gnu: youtube-dl: Update to 2017.07.23.

* gnu/packages/video.scm (youtube-dl): Update to 2017.07.23.
4b8b245b — Tobias Geerinckx-Rice 9 years ago 
gnu: mosh: Update to 1.3.2.

* gnu/packages/ssh.scm (mosh): Update to 1.3.2.
a68a83f0 — Ricardo Wurmus 9 years ago 
gnu: Add openmolar.

* gnu/packages/medical.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: Quiliro <quiliro@fsfla.org>
2456153a — Ricardo Wurmus 9 years ago 
gnu: Add python-pyqt+qscintilla.

* gnu/packages/qt.scm (python-pyqt+qscintilla): New variable.
06d04dbc — Ricardo Wurmus 9 years ago 
gnu: Add python-qscintilla.

* gnu/packages/qt.scm (python-qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
3befd0a9 — Ricardo Wurmus 9 years ago 
gnu: Add qscintilla.

* gnu/packages/qt.scm (qscintilla): New variable.

Co-authored-by: Quiliro <quiliro@fsfla.org>
056468dc — Ricardo Wurmus 9 years ago 
gnu: Add cran module.

* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
30f8349e — Mark H Weaver 9 years ago 
gnu: linux-libre: Update to 4.12.3.

* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.3.
(%linux-libre-hash): Update hash.
d422eac5 — Mark H Weaver 9 years ago 
gnu: linux-libre@4.9: Update to 4.9.39.

* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.39.
f97c67a2 — Mark H Weaver 9 years ago 
gnu: linux-libre@4.4: Update to 4.4.78.

* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.78.
3a4b0b12 — Ricardo Wurmus 9 years ago 
gnu: r-s4vectors: Update to 0.14.3.

* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.14.3.
a35a1e9c — Ricardo Wurmus 9 years ago 
gnu: r-genomicranges: Update to 1.28.4.

* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.28.4.
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