gnu: python-colorama: Update to 0.4.6.

* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.6.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling and python-pytest.

Change-Id: Ifdc20a9dc2a3f21ac59aaaa88fd90abe926595a0

gnu: python-extension-helpers: Update to 1.2.0.

* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.2.0.
[arguments]: Disable broken test.

Change-Id: I3a99240c52fc8114b6eb4d7c3e6642530cf7d756

gnu: python-py2bit: Use pyproject-build-system.

* gnu/packages/bioinformatics.scm (python-py2bit)[build-system]: Use
pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I6f66e5f3c0f7612f460e2a6fa931b4c456db6a1b

gnu: python-biom-format: Use pyproject-build-system.

* gnu/packages/bioinformatics.scm (python-biom-format)[build-system]: Use
pyproject-build-system.
[arguments]: Replace phase 'disable-broken-tests with #:test-flags; enable one
test; add phase 'build-extensions.
[native-inputs]: Remove python-nose.

Change-Id: I8399d9b05bdb6da89d8056d536ab7e25dc22f9c2

gnu: python-webcolors: Update to 24.11.1.

* gnu/packages/python-web.scm (python-webcolors): Update to 24.11.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'patch-pyproject; remove custom 'check phase.
[native-inputs]: Add python-pdm-backend.

Change-Id: Ifcc947d08a369dfafa6f0e0eed473bc6e372ccd6

gnu: python-tox: Update to 4.23.2.

* gnu/packages/python-check.scm (python-tox): Update to 4.23.2.
[build-system]: Use pyproject-build-system.
[arguments]: Update list of disabled tests; remove custom 'check phase; add
phase 'virtualenv-compatibility.
[propagated-inputs]: Add python-typing-extensions; remove python-py and
python-six.
[native-inputs]: Add python-devpi-process, python-time-machine, and
python-wheel; remove python-distlib.

Change-Id: I7390ad0f31bf6536227081e55790b6592b3e7c81

gnu: Add python-devpi-process.

* gnu/packages/python-web.scm (python-devpi-process): New variable.

Change-Id: Ic1829dfbb108a45c44423f570eeb604ddfe73795

gnu: Add python-devpi-client.

* gnu/packages/python-web.scm (python-devpi-client): New variable.

Change-Id: I29e0e3b573111d39b93d595cb7a49c588f5ac99a

gnu: Add python-devpi-server.

* gnu/packages/python-web.scm (python-devpi-server): New variable.

Change-Id: I5ca0e39595f2081f4a71bc0bc71106cac1508ce4

gnu: Add python-devpi-common.

* gnu/packages/python-web.scm (python-devpi-common): New variable.

Change-Id: I9deef7d64b0c6d2c212dddd3ca3113b3f3dd1082

gnu: Add python-pypitoken.

* gnu/packages/python-web.scm (python-pypitoken): New variable.

Change-Id: I0e18205ac87be8cc95af80b62c99c087083cef88

gnu: Add python-lazy.

* gnu/packages/python-xyz.scm (python-lazy): New variable.

Change-Id: I168f5adc0298a147bcfc55caac6aa68fbf3c7e3a

gnu: Add python-packaging-legacy.

* gnu/packages/python-xyz.scm (python-packaging-legacy): New variable.

Change-Id: Ibdb6505baf77e9e9ed93c8b21413f876ada05f5a

gnu: Add python-legacy-cgi.

* gnu/packages/python-web.scm (python-legacy-cgi): New variable.

Change-Id: I36253992291b2294896ae8c01a15f76b33615034

gnu: Add python-repoze-lru.

* gnu/packages/python-xyz.scm (python-repoze-lru): New variable.

Change-Id: I79b094dd7a32c70f0177f27d207b189ab2a856e5

gnu: python-numcodecs: Update to 0.13.1.

* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.13.1.
[source]: Update snippet.
[arguments]: Update selected tests.
[propagated-inputs]: Add python-coverage, python-google-crc32c,
python-importlib-metadata, and python-numpydoc; remove python-entrypoints and
python-typing-extensions.
[native-inputs]: Add python-py-cpuinfo, python-pydata-sphinx-theme,
python-pytest-cov, python-sphinx, and python-sphinx-issues.

Change-Id: Ib2dfc457923c0a435a09ce6d7879090e641b095c

gnu: Add python-strictyaml.

* gnu/packages/serialization.scm (python-strictyaml): New variable.

Change-Id: I41beff94cca813469c6362285973455ed8e8bd67

gnu: python-scikit-build-core: Update to 0.10.7.

* gnu/packages/python-science.scm (python-scikit-build-core): Update to
0.10.7.
[native-inputs]: Add python-pytest-subprocess.

Change-Id: I3da5a9e5d59900335deee2d4a5a1c80d1dd7c5ab

gnu: python-pytest-subprocess: Update to 1.5.2.

* gnu/packages/python-check.scm (python-pytest-subprocess): Update to 1.5.2.
[native-inputs]: Add python-wheel.

Change-Id: I3b5608e21f92306b53999b80dd81377e5cbfffb3

gnu: Add python-time-machine.

* gnu/packages/python-check.scm (python-time-machine): New variable.

Change-Id: I5fce1caf7e659ae349de765a31cc78195d16d703