~ruther/guix-local

9b13e9513511487d5c74b4a3da550b5d42d70b59 — Ricardo Wurmus 1 year, 3 months ago 71327fc 
gnu: python-numcodecs: Update to 0.13.1.

* gnu/packages/python-xyz.scm (python-numcodecs): Update to 0.13.1.
[source]: Update snippet.
[arguments]: Update selected tests.
[propagated-inputs]: Add python-coverage, python-google-crc32c,
python-importlib-metadata, and python-numpydoc; remove python-entrypoints and
python-typing-extensions.
[native-inputs]: Add python-py-cpuinfo, python-pydata-sphinx-theme,
python-pytest-cov, python-sphinx, and python-sphinx-issues.

Change-Id: Ib2dfc457923c0a435a09ce6d7879090e641b095c
patch browse .tar.gz 
1 files changed, 22 insertions(+), 20 deletions(-)

M gnu/packages/python-xyz.scm

M gnu/packages/python-xyz.scm => gnu/packages/python-xyz.scm +22 -20
@@ 29205,15 29205,16 @@ tool).")
(define-public python-numcodecs
  (package
    (name "python-numcodecs")
    ;; XXX: Starting from 0.11.0 numcodecs requires NumPy 1.7 or higher.
    (version "0.10.2")
    (version "0.13.1")
    ;; python-zarr does not want versions 0.14.0 or 0.14.1.
    ;;(version "0.14.1")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "numcodecs" version))
       (sha256
        (base32
         "1i2rvm1f23dapcf6w3mj4877jzq5f24bhfa0fafbv1nr7xmqr0r2"))
         "1g09fwhgmhmw66x5gzmzhm8yhgqki3gpfi0dkhx8z2gh3n43gkx3"))
       (modules '((guix build utils)))
       (snippet
        '(begin


@@ 29224,22 29225,13 @@ tool).")
             (("os\\.name == 'posix'")
              (string-append "os.name + platform.machine() == 'posixx86_64' or"
                             " os.name + platform.machine() == 'posixx86'")))
           (delete-file-recursively "c-blosc")
           (for-each delete-file '("numcodecs/_shuffle.c"
                                   "numcodecs/blosc.c"
                                   "numcodecs/compat_ext.c"
                                   "numcodecs/lz4.c"
                                   "numcodecs/vlen.c"
                                   "numcodecs/zstd.c"))))))
           (delete-file-recursively "c-blosc")))))
    (build-system pyproject-build-system)
    (arguments
     (list
      #:test-flags
      ;; Tests fail with error: ValueError: setting an array element with a
      ;; sequence. The requested array has an inhomogeneous shape after 1
      ;; dimensions. The detected shape was (3,) + inhomogeneous part.
      #~(list "--deselect=numcodecs/tests/test_json.py::test_non_numpy_inputs"
              "--deselect=numcodecs/tests/test_msgpacks.py::test_non_numpy_inputs")
      ;; zarr isn't available, because it dependes on this package.
      '(list "-k" "not test_zarr3_import")
      #:phases
      '(modify-phases %standard-phases
         (add-after 'unpack 'disable-avx2


@@ 29266,13 29258,23 @@ tool).")
     (list c-blosc lz4 zlib
           `(,zstd "lib")))
    (propagated-inputs
     (list python-entrypoints
           python-numpy
     (list python-coverage
           python-google-crc32c
           python-importlib-metadata
           python-msgpack
           python-typing-extensions))
           python-numpy
           python-numpydoc))
    (native-inputs
     (list python-cython python-pytest python-setuptools-scm
           python-setuptools python-wheel))
     (list python-cython
           python-py-cpuinfo
           python-pydata-sphinx-theme
           python-pytest
           python-pytest-cov
           python-setuptools
           python-setuptools-scm ;for correct version
           python-sphinx
           python-sphinx-issues
           python-wheel))
    (home-page "https://github.com/zarr-developers/numcodecs")
    (synopsis "Buffer compression and transformation codecs")
    (description