gnu: Add emacs-llm.

* gnu/packages/emacs-xyz.scm (emacs-llm): New variable.

Change-Id: Ie89eac7a4f0a31245b6d826ae9885a7092528ced
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>

import/cran: Use CRAN mirrors.

* guix/import/cran.scm (%cran-url): Use mirror URL instead of primary project
domain name.

Change-Id: I23a51147d785d6cb645f953ca5ce0ff72f8bd367

gnu: python-click-default-group: Enable tests.

* gnu/packages/python-xyz.scm (python-click-default-group) [source]:
Swap to git checkout containing tests.

Change-Id: I51d039ce03d4d772ed6246233e5cc830b5548c3a

gnu: python-qstylizer: Update to 0.2.3.

* gnu/packages/python-xyz.scm (python-qstylizer): Update to 0.2.3.
[arguments]: Refresh style.
[propagated-inputs]: Remove python-tinycss; add python-tinycss2.
[native-inputs]: Remove python-pytest-cov, python-pytest-runner, and
python-pytest-xdist.

Change-Id: I99bde105d125053e1316372dfbebf90d4236fcc7

gnu: python-argparse-manpage: Update to 4.5.

* gnu/packages/python-xyz.scm (python-argparse-manpage): Update to 4.5.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest and python-tomli.

Change-Id: I8151fb0cc79181c1126a1c00288dc3a96134aa70
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: r-rcpparmadillo: Update to 0.12.8.3.0.

* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.3.0.

Change-Id: I92d8f11bc12a6a0ff7af789aaf0823fdcb33be05

gnu: r-seuratobject: Update to 5.0.2.

* gnu/packages/cran.scm (r-seuratobject): Update to 5.0.2.

Change-Id: I5fef014a90c2b8cf709bfa07f96cd9757059c0fa

gnu: r-ggpmisc: Update to 0.5.6.

* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.6.

Change-Id: I380326e546d65f356cfd9e1a0f03656bc7c8e93a

gnu: Add r-mlr3verse.

* gnu/packages/cran.scm (r-mlr3verse): New variable.

Change-Id: I52c01fffd13c72b599ae5bc9ff809daea11eaa59

gnu: Add r-mlr3viz.

* gnu/packages/cran.scm (r-mlr3viz): New variable.

Change-Id: Iedca442886ebeb09d26cfa44290192c582aeeef3

gnu: Add r-mlr3tuningspaces.

* gnu/packages/cran.scm (r-mlr3tuningspaces): New variable.

Change-Id: Ifb35e78dab862921f000b055d3fa1eee3ef79309

gnu: Add r-mlr3mbo.

* gnu/packages/cran.scm (r-mlr3mbo): New variable.

Change-Id: I23d7af239f7ab55599faf99d5136621cc45c973f

gnu: Add r-mlr3hyperband.

* gnu/packages/cran.scm (r-mlr3hyperband): New variable.

Change-Id: I3e7a829da1f7687ef0bb201f6333bdd519cfa025

gnu: Add r-mlr3fselect.

* gnu/packages/cran.scm (r-mlr3fselect): New variable.

Change-Id: I28ced76c34d99c864c09cbf7b92658fb7676b22c

gnu: Add r-mlr3filters.

* gnu/packages/cran.scm (r-mlr3filters): New variable.

Change-Id: I94bd79843f5f35eeacb1ea788a76b63e9028f548

gnu: Add r-mlr3data.

* gnu/packages/cran.scm (r-mlr3data): New variable.

Change-Id: I93bee828d1ac26da1146c853b4d88fbdec42905f

gnu: Add r-mlr3cluster.

* gnu/packages/cran.scm (r-mlr3cluster): New variable.

Change-Id: I3d970afeeaf4de1793974177bcf5abf64c957d6b

gnu: rcas-web: Update to latest commit.

The latest commit fixes a problem in configure.ac.

* gnu/packages/bioinformatics.scm (rcas-web)[source]: Fetch from git.
[arguments]: Remove 'find-RCAS phase; use G-expression.
[inputs]: Drop labels.  Use Guile 3.0.
[native-inputs]: Add autoconf and automake.

Change-Id: I6f1d300df589a99b9493b2857f58d49e468b210e

FIXUP r-bigmelon

Change-Id: Ic9b038a93c14595da8575de5449b7aa0504d031e

gnu: r-icellnet: Update to 2.2.1-1.e10ee4a.

* gnu/packages/bioinformatics.scm (r-icellnet): Update to 2.2.1-1.e10ee4a.
[propagated-inputs]: Add r-complexheatmap and r-circlize.

Change-Id: Ib844f83cb1ca4f88259593153d9e66289307dccc