@@ 13288,55 13288,52 @@ secondary structure and comparative analysis in R.")
(license license:gpl3+)))
(define-public rcas-web
- (package
- (name "rcas-web")
- (version "0.1.0")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "https://github.com/BIMSBbioinfo/rcas-web/"
- "releases/download/v" version
- "/rcas-web-" version ".tar.gz"))
- (sha256
- (base32
- "0wq951aj45gqki1bickg876i993lmawkp8x24agg264br5x716db"))))
- (build-system gnu-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'configure 'find-RCAS
- ;; The configure script can't find non-1.3.x versions of RCAS because
- ;; its R expression ‘1.10.1 >= 1.3.4’ evaluates to false.
- (lambda _
- (substitute* "configure"
- (("1\\.3\\.4") "0.0.0"))
- #t))
- (add-after 'install 'wrap-executable
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (json (assoc-ref inputs "guile-json"))
- (redis (assoc-ref inputs "guile-redis"))
- (path (string-append
- json "/share/guile/site/2.2:"
- redis "/share/guile/site/2.2")))
- (wrap-program (string-append out "/bin/rcas-web")
- `("GUILE_LOAD_PATH" ":" = (,path))
- `("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
- `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))
- #t)))))
- (inputs
- `(("r-minimal" ,r-minimal)
- ("r-rcas" ,r-rcas)
- ("guile" ,guile-2.2)
- ("guile-json" ,guile-json-1)
- ("guile-redis" ,guile2.2-redis)))
- (native-inputs
- (list pkg-config))
- (home-page "https://github.com/BIMSBbioinfo/rcas-web")
- (synopsis "Web interface for RNA-centric annotation system (RCAS)")
- (description "This package provides a simple web interface for the
+ (let ((commit "71c93e3835653beb4eaa6e89b860bee3779729b8")
+ (revision "2"))
+ (package
+ (name "rcas-web")
+ (version (git-version "0.1.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BIMSBbioinfo/rcas-web")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0232g0f7g0w5cgaib462zbfssvfq8i0iqv5b5wfmbrbn0sw99l9a"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'wrap-executable
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((json #$(this-package-input "guile-json"))
+ (redis #$(this-package-input "guile-redis"))
+ (path (string-append
+ json "/share/guile/site/3.0:"
+ redis "/share/guile/site/3.0")))
+ (wrap-program (string-append #$output "/bin/rcas-web")
+ `("GUILE_LOAD_PATH" ":" = (,path))
+ `("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
+ `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))))))))
+ (inputs
+ (list r-minimal
+ r-rcas
+ guile-3.0
+ guile-json-4
+ guile-redis))
+ (native-inputs
+ (list autoconf
+ automake
+ pkg-config))
+ (home-page "https://github.com/BIMSBbioinfo/rcas-web")
+ (synopsis "Web interface for RNA-centric annotation system (RCAS)")
+ (description "This package provides a simple web interface for the
@dfn{RNA-centric annotation system} (RCAS).")
- (license license:agpl3+)))
+ (license license:agpl3+))))
(define-public r-chipkernels
(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")