gnu: font-monaspace: Update to 1.301.

* gnu/packages/fonts.scm (font-monaspace): Update to 1.301.

Closes: guix/guix#4412
Change-Id: I27614eafc1fdef8f4e32f658778fbb80aec7273f
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>

gnu: Remove htslib-1.14.

* gnu/packages/bioinformatics.scm (htslib-1.14): Delete variable.

Change-Id: Ic009b3ea5bd2b718461dc049df2f71e8e14f0864

gnu: Remove htslib-1.9.

* gnu/packages/bioinformatics.scm (htslib-1.9): Delete variable.

Change-Id: I4961b197f6357880e82a856ad3f661435eb980db

gnu: perl-bio-db-hts: Swap outdated input.

* gnu/packages/bioinformatics.scm (perl-bio-db-hts)[propagated-inputs]:
Replace htslib-1.9 by htslib.

Change-Id: I509e2ee9165d70c04753b467852fe40c805e6ea7

gnu: Remove pbcopper.

* gnu/packages/bioinformatics.scm (pbcopper): Delete variable.

Fixes: guix/guix#3781
Change-Id: Ibde3554af08d72f2e3d64c9e1a4226871402bbec

gnu: Remove pbbam.

* gnu/packages/bioinformatics.scm (pbbam): Delete variable.

Change-Id: I75ff8816ca4c37508864890ee2561b3947a53dc1

gnu: Remove blasr-libcpp.

* gnu/packages/bioinformatics.scm (blasr-libcpp): Delete variable.

Change-Id: I93cbb12041bd544d381851e44b17d3bd1596e4cf

gnu: Remove blasr.

* gnu/packages/bioinformatics.scm (blasr): Delete variable.

Change-Id: I7c10109d4a168c868f1a7c8587584ad738378506

gnu: Remove snorenotify.

* gnu/packages/kde-internet.scm (snorenotify): Delete variable.

Fixes: guix/guix#3789
Change-Id: If582994055d809f85ddbc038f755e0f0f810a0c9

gnu: Remove python-neovim-remote.

* gnu/packages/vim.scm (python-neovim-remote): Delete variable.

Fixes: guix/guix#3774
Change-Id: I34f349e239ba1b17ec67d33401fdd5ac5ec37b1e

gnu: Remove movim-desktop.

* gnu/packages/messaging.scm (movim-desktop): Delete variable.

Fixes: guix/guix#3763
Change-Id: I8c068c0e4b8a90ec5cbb32effc80ab7a6dbb7ea5

gnu: Remove openmolar-1.

* gnu/packages/medical.scm (openmolar-1): Delete variable.

Fixes: guix/guix#3762
Change-Id: I44512fc468dc1ce11976f84576d3885c36571ce9

gnu: python-afdko-3.6.1: Swap deprecated input.

* gnu/packages/fontutils.scm (python-afdko-3.6.1)[propagated-inputs]:
Replace python-lxml-4.9 by python-lxml.

Change-Id: I5c971c78cfe86fc7f1cc609754fbe176434f106b

gnu: python-afdko: Swap deprecated input.

* gnu/packages/fontutils.scm (python-afdko)[propagated-inputs]:
Replace python-lxml-4.9 by python-lxml.

Change-Id: I0761f4c051d9856b715387c529af4c4a650addc0

gnu: nototools: Update to 0.3.2.

* gnu/packages/fontutils.scm (nototools): Update to 0.3.2.

Change-Id: Ibd834e7d4d83031b6dd90f9c3b9ef5aadb8ee194

gnu: nototools: Fix tests.

* gnu/packages/fontutils.scm (nototools)[native-inputs]: Add python-pillow.

Change-Id: I8abecfab16a4a954303da43babe87340f970f917

gnu: Remove openconnect-sso.

* gnu/packages/vpn.scm (openconnect-sso): Delete variable.

Fixes: guix/guix#3761
Change-Id: Idc475481b419258cbe3a0912ce0e5f5c86d890ee

gnu: python-iwlib: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-iwlib):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Add phase 'cleanup.
[native-inputs]: Add python-pytest, python-setuptools.

Change-Id: I5fa6b46e1f772da1f1b87756271e82032b46fcef
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-orgparse: Update to 0.4.20251020.

* gnu/packages/python-xyz.scm (python-orgparse): Update to 0.4.20251020.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Ignore failing tests.
<#:phases>: Add phase 'set-version.
[native-inputs]: Add python-hatchling, python-hatch-vcs.  Remove python-setuptools-scm.

Change-Id: Ia69cb8d13053e880da1ed0ae4bc62f7b370a39d3
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-ordered-set: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-ordered-set):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-flit-core.

Change-Id: Ic5259435195b147858cc0b22560199721e10a6d1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>