gnu: surf: Update to 2.0.
* gnu/packages/suckless.scm (surf): Update to 2.0.
[inputs]: Replace webkitgtk/gtk+-2 with webkitgtk.
size: Add test to multiple 'store-profile' arguments.
* tests/size.scm ("store-profile with multiple items"): New test.
size: Avoid '_' as a pattern variable in 'match'.
* guix/scripts/size.scm (display-profile, profile->page-map): Don't use
'_' as a 'match' pattern variable.
gnu: flann: Move .mex file to a separate "octave" output.
That way the closure of flann:out is down from 1 GiB
to 290 MiB.
* gnu/packages/maths.scm (flann)[outputs]: New field.
[arguments]: Add 'set-octave-directory' phase.
gnu: webkitgtk: Update to 2.16.1.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.1.
gnu: armadillo: Change license to ASL 2.0.
Armadillo versions 7.800 and onwards are licensed under the Apache License
2.0.
* gnu/packages/maths.scm (armadillo)[license]: Change to ASL 2.0.
gnu: re2: Update to 2017-04-01.
* gnu/packages/regex.scm (re2): Update to 2017-04-01.
gnu: feh: Update to 2.18.3.
* gnu/packages/image-viewers.scm (feh): Update to 2.18.3.
gnu: libusb: Update to 1.0.21.
* gnu/packages/libusb.scm (libusb): Update to 1.0.21.
[home-page]: Update to new URL.
gnu: libmtp: Update to 1.1.13 [security fixes].
* gnu/packages/libusb.scm (libmtp): Update to 1.1.13.
gnu: r-sourcetools: Update to 0.1.6.
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
gnu: r-seqinr: Update to 3.3-6.
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-6.
gnu: Remove armadillo-for-rcpparmadillo.
This package is no longer useful, because upstream does not keep the tarballs
of older releases. We use the bundled armadillo sources in the
r-rccparmadillo package instead.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
gnu: armadillo: Update to 7.800.2.
* gnu/packages/maths.scm (armadillo): Update to 7.800.2.
gnu: r-annotationforge: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.1.
gnu: r-shortread: Update to 1.32.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.1.
gnu: r-s4vectors: Update to 0.12.2.
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.2.
gnu: r-iranges: Update to 2.8.2.
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.2.
gnu: r-variantannotation: Update to 1.20.3.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.3.