gnu: re2: Update to 2017-04-01. * gnu/packages/regex.scm (re2): Update to 2017-04-01.
gnu: feh: Update to 2.18.3. * gnu/packages/image-viewers.scm (feh): Update to 2.18.3.
gnu: libusb: Update to 1.0.21. * gnu/packages/libusb.scm (libusb): Update to 1.0.21. [home-page]: Update to new URL.
gnu: libmtp: Update to 1.1.13 [security fixes]. * gnu/packages/libusb.scm (libmtp): Update to 1.1.13.
gnu: r-sourcetools: Update to 0.1.6. * gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
gnu: r-seqinr: Update to 3.3-6. * gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-6.
gnu: Remove armadillo-for-rcpparmadillo. This package is no longer useful, because upstream does not keep the tarballs of older releases. We use the bundled armadillo sources in the r-rccparmadillo package instead. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
gnu: r-rcpparmadillo: Update to 0.7.700.0.0. * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0. [source]: Do not delete bundled armadillo sources, because upstream no longer hosts previous versions. [propagated-inputs]: Remove "armadillo-for-rcpparmadillo". [arguments]: Remove because we no longer need to link with the armadillo library. * gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no longer need to link with armadillo library.
gnu: armadillo: Update to 7.800.2. * gnu/packages/maths.scm (armadillo): Update to 7.800.2.
gnu: r-annotationforge: Update to 1.16.1. * gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.1.
gnu: r-shortread: Update to 1.32.1. * gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.1.
gnu: r-s4vectors: Update to 0.12.2. * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.2.
gnu: r-iranges: Update to 2.8.2. * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.2.
gnu: r-variantannotation: Update to 1.20.3. * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.3.
gnu: r-limma: Update to 3.30.13. * gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.13.
gnu: r-genomicranges: Update to 1.26.4. * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.4.
gnu: r-annotationdbi: Update to 1.36.2. * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.2.
gnu: r-genomicalignments: Update to 1.10.1. * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.10.1.
gnu: r-rtracklayer: Update to 1.34.2. * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.2.
gnu: r-genomicfeatures: Update to 1.26.4. * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.4.