gnu: python-apscheduler: Update to 3.11.1.

* gnu/packages/python-xyz.scm (python-apscheduler): Update to 3.11.1.
[source]: Fix PyPI URI.
[arguments]: Deselect tests failing with latest python-pytest-asyncio.
[propagated-inputs]: Remove python-pytz and python-six.
[native-inputs]: Remove python-mock, python-pytest-cov,
python-pytest-tornado5, and python-wheel; add python-anyio, python-pytz,
and python-tornado.

Change-Id: Iaf52ba8dce6f2251810589157bc98b8da835e2c0
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-duckdb: Move to duckdb.

* gnu/packages/python-xyz.scm (python-duckdb): Move from here ...
* gnu/packages/duckdb.scm: ... to here.

* gnu/packages/python-science.scm: Add (gnu packages duckdb).

Change-Id: Ic8551cdd64f718e62a12576fbc1a38bf861d1644

gnu: python-pykwalify: Update to 1.8.0.

* gnu/packages/python-xyz.scm (python-pykwalify): Update to 1.8.0.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-flags>: Disable test flags.
[native-inputs]: Add python-pytest, python-setuptools and
python-testfixtures.
[propagated-inputs]: Add python-ruamel.yaml.
[synopsis]: Improve style.

Change-Id: Idaeb4ba631f492c937d4d7f6abe4731a9f290d42
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-interlap: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-interlap):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-backend, #:test-flags>: Set them.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I652d4793f240ae1b628a2cc9808841c1b6c8fcd4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-intelhex: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-intelhex):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:test-backend>: Set it.
[native-inputs]: Add python-setuptools.
[description]: Improve style.

Change-Id: I60ae05c9034c15e9c2d0712d79f4d643e8e55671
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pyphen: Update to 0.17.2.

* gnu/packages/python-xyz.scm (python-pyphen): Update to 0.17.2.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-flit-core, python-pytest.

Change-Id: I5022faa0e4f2391f08b43bd002a0643369d391ea
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-bibtexparser: Update to 2.0.0b8.

* gnu/packages/python-xyz.scm (python-bibtexparser): Update to 2.0.0b8.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Remove python-future.  Add python-pylatexenc,
python-pytest and python-setuptools.
(python-bibtexparser-for-cobib): New variable.

* gnu/packages/textutils.scm (cobib)[propagated-inputs]: Remove
python-bibtexparser; add python-bibtexparser-for-cobib.

Change-Id: I924fba9ccf9487dea6409fb4d1e1d69ab026c130
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-pyroutelib3: Update to 2.0.0.

* gnu/packages/python-xyz.scm (python-pyroutelib3): Update to 2.0.0.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Add python-protobuf-5.
[native-inputs]: Add python-filelock, python-flit-core, python-pytest.

Change-Id: I15f41b76ec18b22fc239a05559d35ff9f67a8e99
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-dbfread: Update to 2.0.7-0.dce5446.

* gnu/packages/python-xyz.scm (python-dbfread): Update to 2.0.7-0.dce5446.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Add phase 'relax-setup.py.
[native-inputs]: Add python-pytest, python-setuptools.

Change-Id: I9bcc3d44124d5a0f4b38d79682ddfca8aa6ee1ff
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Add python-berkeleydb.

* gnu/packages/python-xyz.scm (python-berkeleydb): New variable.
(python-bsddb3): Inherit from python-berkeleydb.

Change-Id: Icc9bb816a243f7bbc7b03f067ec4e8dfb9ba5125
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-croniter: Update to 5.0.1.

* gnu/packages/python-xyz.scm (python-croniter): Update to 5.0.1.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools.
[propagated-inputs]: Add python-pytz.

Change-Id: Idbe53c299cadb11d2107aba36d8471242d905ceb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-construct: Switch to pyproject.

* gnu/packages/python-xyz.scm (python-construct):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Remove 'check phase.
<#:test-flags>: Ignore benchmark tests.
[native-inputs]: Add python-setuptools.  Remove
python-pytest-benchmark.

Change-Id: I9097caa0369d49bbda3ec8883468881ace24bbed
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Remove python-bumpversion.

Undeveloped for 10 years, deprecated for 6, fails to build.

* gnu/packages/python-xyz.scm (python-bumpversion): Delete variable.

Fixes: guix/guix#3403
Change-Id: I543d47e8b32d1abefba5918094af60f6af4b3b7f

gnu: python-apscheduler: Fix build.

* gnu/packages/python-xyz.scm (python-apscheduler): Fix build.
  [native-inputs]: Replace python-pytest-asyncio by
  python-pytest-asyncio-0.26.

Change-Id: I7cc0bc7d687bc40bbda93d453b22698d85232c48
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-gfloat: Update to 0.5.2.

* gnu/packages/python-xyz.scm (python-gfloat): Update to 0.5.2.
[arguments]: Adjust #:test-flags.
[propagated-inputs]: Add python-array-api-compat.
[native-inputs]: Remove python-wheel; add python-ml-dtypes, python-pytorch, and
openssl.

Change-Id: Id354d09933ad471b24cb5aa97d7fbecbe0157ce3
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-bitstring: Fix tests.

Disable a couple of tests, which are incompatible with upgrade of python-gfloat.

* gnu/packages/python-xyz.scm (python-bitstring)[arguments]: Adjust

Change-Id: I66358e5390ce939f83403ef1247e70b82b9f604d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: python-array-api-compat: Update to 1.12.0.

* gnu/packages/python-xyz.scm (python-array-api-compat): Update to 1.12.0.
[propagated-inputs]: Remove python-numpy.
[native-inputs]: Remove python-wheel.

Change-Id: Ie8dacb74c5443266b3edcb3c7c52a7cdc4f93fae
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

gnu: Remove python-rawkit.

Fails to build, no users in Guix. The project never pass through alpha
stage.

Notes from upstream:

  rawkit is still alpha quality software. Until it hits 1.0, it may
  undergo substantial changes, including breaking API changes.

  This repository was archived by the owner on Oct 4, 2020. It is now
  read-only.

* gnu/packages/python-xyz.scm (python-rawkit): Delete variable.

Fixes: guix/guix#3265
Change-Id: I57950ba736e0b5de1e7a1bdf8cac65ec570cdb00

gnu: Remove python-d2to1.

Fails to build, no longer required.

Note from upstream:

  This repository was archived by the owner on Jun 10, 2020. It is now
  read-only.

* gnu/packages/python-xyz.scm (python-d2to1): Delete variable.

Fixes: guix/guix#3251
Change-Id: I3c37e8f289026e1e8e5147a666f717c8310b5b9e

gnu: python-txredisapi: Sort variable.

* gnu/packages/python-xyz.scm (python-txredisapi): Sort variable
alphabetically.

Change-Id: I7051c0efab8f21dd173f074b5ab039d4ee8c10ba