~ruther/guix-local

ref: f0150f8724f09fa650a0cbb66d3ef5a8a99804c4 guix-local/gnu d---------
f0150f87 — Leo Famulari 10 years ago 
gnu: grub: Add fix for CVE-2015-8730.

* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
e2cd1d0f — Ricardo Wurmus 10 years ago 
gnu: Add GenomicRanges.

* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
0e7d5560 — Ricardo Wurmus 10 years ago 
gnu: Add XVector.

* gnu/packages/bioinformatics.scm (r-xvector): New variable.
bf7764b7 — Ricardo Wurmus 10 years ago 
gnu: Add GenomeInfoDb.

* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
78addcb0 — Ricardo Wurmus 10 years ago 
gnu: Add IRanges.

* gnu/packages/bioinformatics.scm (r-iranges): New variable.
7485129e — Ricardo Wurmus 10 years ago 
gnu: Add S4Vectors.

* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
d29b25c4 — Ricardo Wurmus 10 years ago 
gnu: Add BiocGenerics.

* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
9fba89e8 — Ricardo Wurmus 10 years ago 
gnu: Add r-acsnminer.

* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
9e47f30b — Ricardo Wurmus 10 years ago 
gnu: Add r-gridextra.

* gnu/packages/statistics.scm (r-gridextra): New variable.
b73751c8 — Ricardo Wurmus 10 years ago 
gnu: Add r-gtable.

* gnu/packages/statistics.scm (r-gtable): New variable.
77bdb276 — Ricardo Wurmus 10 years ago 
gnu: Add r-rmarkdown.

* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
  prevent circular package module imports.
4c1f2705 — Ricardo Wurmus 10 years ago 
gnu: Add r-catools.

* gnu/packages/statistics.scm (r-catools): New variable.
bb6d2dad — Ricardo Wurmus 10 years ago 
gnu: Add r-bitops.

* gnu/packages/statistics.scm (r-bitops): New variable.
8406138b — Ricardo Wurmus 10 years ago 
gnu: Add AdaptiveSparsity.

* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
e22d4ca4 — Ricardo Wurmus 10 years ago 
gnu: Add r-rcpparmadillo.

* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
b15e47f9 — Ricardo Wurmus 10 years ago 
gnu: Add armadillo.

* gnu/packages/maths.scm (armadillo): New variable.
086e498b — Ricardo Wurmus 10 years ago 
gnu: Add libgit2.

* gnu/packages/version-control.scm (libgit2): New variable.
02f35bb5 — Ben Woodcroft 10 years ago 
gnu: mafft: Update to 7.267.

* gnu/packages/bioinformatics.scm (mafft): Update to 7.267.
[arguments]: Don't include mafft-homologs manpage.
[inputs]: Add gawk and grep.
[propagated-inputs]: Add coreutils.
1ef3f91a — Mathieu Lirzin 10 years ago 
gnu: rxvt-unicode: Install the terminal capability data.

This provides the necessary terminal capability data, which are required
by ncurses-based applications.

* gnu/packages/xdisorg.scm (rxvt-unicode)[native-inputs]: Add ncurses.
[arguments]: Set the destination of the terminfo files.
[native-search-path]: New field.  Make them automatically available to
the user.
72d8b5ba — Efraim Flashner 10 years ago 
gnu: msmtp: Update to 1.6.3.

* gnu/packages/mail.scm (msmtp): Update to 1.6.3.
[inputs]: Add libsecret.
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