~ruther/guix-local

9fba89e8298303a94e098489d6a6806dbf25533b — Ricardo Wurmus 10 years ago 9e47f30
gnu: Add r-acsnminer.

* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
1 files changed, 26 insertions(+), 0 deletions(-)

M gnu/packages/bioinformatics.scm
M gnu/packages/bioinformatics.scm => gnu/packages/bioinformatics.scm +26 -0
@@ 3140,6 3140,32 @@ BLAST, KEGG, GenBank, MEDLINE and GO.")
    ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+)
    (license (list license:ruby license:lgpl2.1+ license:gpl2+ ))))

(define-public r-acsnminer
  (package
    (name "r-acsnminer")
    (version "0.15.11")
    (source (origin
              (method url-fetch)
              (uri (cran-uri "ACSNMineR" version))
              (sha256
               (base32
                "1dl4drhjyazwm9wxlm8yfppwvvj4h6jxwmz8kfw5bxpb3jdnsqvy"))))
    (properties `((upstream-name . "ACSNMineR")))
    (build-system r-build-system)
    (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
        ("r-gridextra" ,r-gridextra)))
    (home-page "http://cran.r-project.org/web/packages/ACSNMineR")
    (synopsis "Gene enrichment analysis")
    (description
     "This package provides tools to compute and represent gene set enrichment
or depletion from your data based on pre-saved maps from the @dfn{Atlas of
Cancer Signalling Networks} (ACSN) or user imported maps.  The gene set
enrichment can be run with hypergeometric test or Fisher exact test, and can
use multiple corrections.  Visualization of data can be done either by
barplots or heatmaps.")
    (license license:gpl2+)))

(define-public r-qtl
 (package
  (name "r-qtl")