~ruther/guix-local

ref: e7c097306dea32cece9b2001ffc9918e1076677f guix-local/gnu/packages/bioinformatics.scm -rw-r--r-- 77.8 KiB
e7c09730 — Ricardo Wurmus 10 years ago 
gnu: Add HTSlib.

* gnu/packages/bioinformatics.scm (htslib): New variable.
132b4c8c — Ricardo Wurmus 10 years ago 
gnu: ncbi-vdb: Use "i386" instead of "i686" in directory name.

* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Copy libraries from
  "linux/gcc/i386" directory instead of "linux/gcc/i686" when building on
  i686.
365c8153 — Ricardo Wurmus 10 years ago 
gnu: Add edirect.

* gnu/packages/bioinformatics.scm (edirect): New variable.
628bd9b8 — Ricardo Wurmus 11 years ago 
gnu: shogun: Remove non-free source files.

* gnu/packages/bioinformatics.scm (shogun)[source]: Add snippet to remove
  non-free sources.
86a81222 — 宋文武 10 years ago 
Merge branch 'master' into gtk-rebuild

Conflicts:
	gnu/packages/gtk.scm
66e3eff1 — Ricardo Wurmus 10 years ago 
gnu: Add rsem.

* gnu/packages/bioinformatics.scm (rsem): New variable.
* gnu/packages/patches/rsem-makefile.patch: New file.
7c3958e1 — Ricardo Wurmus 11 years ago 
gnu: vcftools: Remove "-m64" from CFLAGS.

* gnu/packages/bioinformatics.scm (vcftools): Explicitly set CFLAGS to
  remove "-m64" flag.
4702cec2 — Ricardo Wurmus 11 years ago 
gnu: bamtools: Set rpath via LDFLAGS.

* gnu/packages/bioinformatics.scm (bamtools): Add a pre-configure phase
  setting $LDFLAGS to set the rpath to $out/lib/bamtools.
0b84a0aa — Ricardo Wurmus 11 years ago 
gnu: Add samtools-0.1.19.

* gnu/packages/bioinformatics.scm (samtools-0.1): New variable.
41dd7126 — Ricardo Wurmus 11 years ago 
gnu: samtools: Install libbam.a library.

* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase
  "install-library" to install the libbam.a library.
0a75450c — Ricardo Wurmus 11 years ago 
gnu: samtools: Remove patch-makefile-curses phase.

* gnu/packages/bioinformatics.scm (samtools)[arguments]: Remove
  patch-makefile-curses phase, use make-flags instead.
bf4af30b — Ludovic Courtès 11 years ago 
Merge branch 'master' into core-updates
4ca009c0 — Ricardo Wurmus 11 years ago 
gnu: flexbar: Enable tests.

* gnu/packages/bioinformatics.scm (flexbar): Enable tests.
4ac0d644 — Andreas Enge 11 years ago 
Merge branch 'master' into core-updates.
e4e5a4d8 — Ricardo Wurmus 11 years ago 
gnu: Add eXpress.

* gnu/packages/bioinformatics.scm (express): New variable.
9794180d — Ricardo Wurmus 11 years ago 
gnu: Add bamtools.

* gnu/packages/bioinformatics.scm (bamtools): New variable.
dbf4ed7c — Ricardo Wurmus 11 years ago 
gnu: Add subread.

* gnu/packages/bioinformatics.scm (subread): New variable.
51c64999 — Ricardo Wurmus 11 years ago 
gnu: Add sra-tools.

* gnu/packages/bioinformatics.scm (sra-tools): New variable.
75dd2424 — Ricardo Wurmus 11 years ago 
gnu: Add NCBI VDB.

* gnu/packages/bioinformatics.scm (ncbi-vdb): New variable.
2651a5e6 — Ricardo Wurmus 11 years ago 
gnu: Add NGS Java bindings.

* gnu/packages/bioinformatics.scm (ngs-java): New variable.
Next