gnu: subread: Use SSE optimizations on x86_64 only.
* gnu/packages/bioinformatics.scm (subread)[arguments]: Override CC and
CCFLAGS conditionally dependent on target system.
gnu: crossmap: Update to 0.2.1.
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.1.
gnu: Add MOSAIK.
* gnu/packages/bioinformatics.scm (mosaik): New variable.
gnu: ngs-sdk: Correct typo.
* gnu/packages/bioinformatics.scm (ngs-sdk): Correct typo.
gnu: ngs-sdk: Remove unsupported systems.
* gnu/packages/bioinformatics.scm (ngs-sdk)[supported-systems]: Keep only x86
based systems.
gnu: diamond: Restrict supported systems to x86_64-linux.
* gnu/packages/bioinformatics.scm (diamond) [supported-systems]: Restrict to
x86_64-linux.
gnu: bwa: Disable on non-x86_64.
* gnu/packages/bioinformatics.scm (bwa)[supported-systems]: Add field.
Merge branch 'master' into core-updates
gnu: vsearch: Restrict supported systems to x86_64-linux.
* gnu/packages/bioinformatics.scm (vsearch)[supported-systems]: Restrict
to x86_64-linux.
Signed-off-by: Andreas Enge <andreas@enge.fr>
gnu: clipper: Add 'file-name' field to source origin.
* gnu/packages/bioinformatics.scm (clipper)[source]: Add file-name.
gnu: Add vsearch.
* gnu/packages/bioinformatics.scm (vsearch): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
gnu: Add bio-blastxmlparser.
* gnu/packages/bioinformatics.scm (bio-blastxmlparser): New variable.
Merge branch 'core-updates'
gnu: Add seqmagick.
* gnu/packages/bioinformatics.scm (seqmagick): New variable.
Merge branch 'master' into core-updates
gnu: Add R/qtl.
* gnu/packages/bioinformatics.scm (r-qtl): New variable.
Co-authored-by: Pjotr Prins <pjotr.guix@thebird.nl>
gnu: Add bioruby.
* gnu/packages/bioinformatics.scm (bioruby): New variable.
gnu: Add mafft.
* gnu/packages/bioinformatics.scm (mafft): New variable.
gnu: Add bio-locus.
* gnu/packages/bioinformatics.scm (bio-locus): New variable.